Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas fluorescens FW300-N2E2

 Score =  278 bits (710), Expect = 3e-79
 Identities = 172/452 (38%), Positives = 251/452 (55%), Gaps = 24/452 (5%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D +++   +R  L      +    +   A   + R+  DL  LDLRL +  G+DVL 
Sbjct: 13  LVDDESAILRTFRYCLEDEGYSVATANSAAQADALLQRQVFDLCFLDLRLGEDNGLDVLA 72

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI---RKASK 117
            ++ ++P + +V +TAH ++DTAV+A++ GA D+L+KPC  D+LR+     +   + +++
Sbjct: 73  QMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSAR 132

Query: 118 LKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAAS 177
           L+       +   G    S  M+ V  T    AS+ A+I I GESGTGK   A+AIH  S
Sbjct: 133 LEALEGEVRKPKDGLDSHSPAMKVVLETARQVASTDANILILGESGTGKGELAQAIHGWS 192

Query: 178 KRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMD 237
           KR  K  + INC ++  +L+ESELFGH +GAFTGA+    G    ADGGTLFLDE+ +  
Sbjct: 193 KRAKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADGGTLFLDEIGDFP 252

Query: 238 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIP 297
           L LQ KLLRFIQ   +++VG    +  DVR + ATN +    V++GRFREDL YRL VI 
Sbjct: 253 LTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYRLNVIT 312

Query: 298 LHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLR 357
           LHLPPLR R +D++ +A   L    KE  +     S E  E    Y WPGN+R+L+NV+ 
Sbjct: 313 LHLPPLRERAEDILTLADRFLARFVKEYARPARGFSDEAREALLGYRWPGNIRELRNVVE 372

Query: 358 --NVVVLNEGREIT-LDMLPPPLNQMSAP-INRALPLAHENKVSVHEIFPLWMTEKQAIE 413
             +++   E  EI+ L M   P+N  +AP I  AL L    K  +               
Sbjct: 373 RASIICPQEKVEISHLGMAEQPVN--NAPRIGAALSLDELEKAHI--------------- 415

Query: 414 QAIEACDGNIPRAATYLDVSPSTIYRKLQTWN 445
            A+ A    + +AA  L +  ST+YRK + +N
Sbjct: 416 GAVLATADTLDQAAKTLGIDASTLYRKRKQYN 447