Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., Two-component sensor CbrB: intrcellular carbon:nitrogen balance from Pseudomonas fluorescens FW300-N1B4

 Score =  287 bits (735), Expect = 5e-82
 Identities = 162/389 (41%), Positives = 228/389 (58%), Gaps = 21/389 (5%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED   + +  R  L      ++  G+ ++A E       DLI+ DLRLP   G +++ 
Sbjct: 6   IVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTELI- 64

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKL-- 118
              +     P++ MT++ S+ +AV++M+ GA D++ KP + D +   V   +R       
Sbjct: 65  ---KLGQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQSAQA 121

Query: 119 --------------KNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGT 164
                         KN VDN N    G IGS   MQ +Y  I   A + +++ I GESGT
Sbjct: 122 SGEPVVGKTSNGAAKNGVDNSNGEI-GIIGSCPPMQDLYSKIRKVAPTDSNVLIQGESGT 180

Query: 165 GKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAAD 224
           GKE+ A A+H  SKR   P I++NCAAIP+ LIESELFGH KGAFTGA+  R G  EAAD
Sbjct: 181 GKELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAAD 240

Query: 225 GGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGR 284
           GGTLFLDE+ E+ L+ Q +LLR +Q G  ++VGS + + VDVR + AT+RD     + G+
Sbjct: 241 GGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQ 300

Query: 285 FREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYE 344
           FREDLYYRL+VI L LP LR RG DV EIA + L   S   G+  ++ + +  +  R Y 
Sbjct: 301 FREDLYYRLHVIALKLPALRERGADVNEIATAFLARQSARVGRTDLKFALDAEQAIRHYS 360

Query: 345 WPGNVRQLQNVLRNVVVLNEGREITLDML 373
           WPGNVR+L+N +   V+L E  EI+ ++L
Sbjct: 361 WPGNVRELENAVERAVILCESPEISAELL 389