Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  283 bits (725), Expect = 6e-81
 Identities = 155/384 (40%), Positives = 227/384 (59%), Gaps = 15/384 (3%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED   + +  R  L     +++  G+ ++A E       DLI+ DLRLP   G +++ 
Sbjct: 6   IVEDETIIRSALRRLLERNQYEVSEAGSVQEAQERYSIPGFDLIVSDLRLPGAPGTELI- 64

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI-------- 112
              + +   P++ MT++ S+ +AV++M+ GA D++ KP + D +  TV   +        
Sbjct: 65  ---KLAEGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQTVARILSDHQQSAA 121

Query: 113 ---RKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVC 169
              + A           ++  G IG    MQ ++  I   A + +++ I GESGTGKE+ 
Sbjct: 122 VQAQPARSASATAAGSGRDDIGIIGHCAPMQDLFGKIRKVAPTDSNVLIQGESGTGKELV 181

Query: 170 AEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLF 229
           A A+H  S+R   P I++NCAAIP+ LIESELFGH KGAFTGA+  R G  EAADGGTLF
Sbjct: 182 ARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGLVEAADGGTLF 241

Query: 230 LDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDL 289
           LDE+ E+ L+ Q +LLR +Q G  ++VGS + + VDVR + AT+RD     + G+FREDL
Sbjct: 242 LDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKTLAKTGQFREDL 301

Query: 290 YYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNV 349
           YYRL+VI L LPPLR RG DV+EIA + L    +  G D +  S +  +  R Y WPGNV
Sbjct: 302 YYRLHVIALKLPPLRERGSDVLEIAKAFLARQGERMGSDDLHFSRDAEQAIRHYSWPGNV 361

Query: 350 RQLQNVLRNVVVLNEGREITLDML 373
           R+L+N +    +L+E  EI  ++L
Sbjct: 362 RELENAIERAAILSESPEIDAELL 385