Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  289 bits (739), Expect = 2e-82
 Identities = 165/434 (38%), Positives = 256/434 (58%), Gaps = 12/434 (2%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +++D   +  L    L  + +D       ++A E + R   DL L D+RLPD +G++++ 
Sbjct: 28  IIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGSGLELVQ 87

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIR-KASKLK 119
            ++++ P +P+  +TA+GS+DTA+ A++ GA DFL KP + +RLR  V+ A+R +A   +
Sbjct: 88  YIQQQHPQLPVAMITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPATE 147

Query: 120 NDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKR 179
             VD++       +G S  M+ + + I   A S+A ++I+GESG+GKE+ A  IH    R
Sbjct: 148 APVDSR------LLGGSPPMKVLRKQIGKLARSQAPVYISGESGSGKELVARLIHEQGPR 201

Query: 180 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLD 239
            +K F+ +NC AIP +L+ESE FGH KG+F+GA  ++ G  +AA GGTLFLDE+ ++ L 
Sbjct: 202 AEKTFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAASGGTLFLDEVADLPLP 261

Query: 240 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 299
           +Q KLLR IQ    + VG ++   VDVR +CAT++D   EV  GRFR+DLYYRL VI L 
Sbjct: 262 MQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELR 321

Query: 300 LPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNV 359
           +PPLR R +D+  +A ++L  +++E G     L  E + +   Y +PGNVR+L+N+L   
Sbjct: 322 VPPLRERREDIRLLADAMLRRLAQECGDSIAHLHPEALAKLESYRFPGNVRELENMLERA 381

Query: 360 VVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEAC 419
             L +G EI    L    +  S+  N    LA  + +  H    L   E++ I QA+E  
Sbjct: 382 YTLCDGEEIKAGDLRLADSPGSSE-NGEASLAQIDNLEDH----LEEIERKLIMQALEET 436

Query: 420 DGNIPRAATYLDVS 433
             N   AA  L ++
Sbjct: 437 RWNRTAAAQRLGLT 450