Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas stutzeri RCH2

 Score =  298 bits (764), Expect = 2e-85
 Identities = 175/461 (37%), Positives = 259/461 (56%), Gaps = 15/461 (3%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D  S+  +    L    +      +    +  + R++PD+I+ D+R+P ++G+D+L 
Sbjct: 9   IVDDDRSIRWVLEKALQQEGMATQSFDSADGVLARLARQQPDVIISDIRMPGLSGLDMLS 68

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            ++E+ P +P++ MTAH  +D+AV + + GA ++L KP + D     V  A + A + +N
Sbjct: 69  QIREQYPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDDAVSLVKRANQHAQEQQN 128

Query: 121 DVDNKNQNYQG-FIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKR 179
             +  N+++    IG +  MQ V+R I   + S  ++ I GESGTGKE+ A A+H  S R
Sbjct: 129 QQEPANRHHTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPR 188

Query: 180 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLD 239
              PFIA+N AAIPKDL+ESELFGH KGAFTGAA +R+G  E ADGGTLFLDE+ +M  D
Sbjct: 189 SASPFIALNMAAIPKDLMESELFGHEKGAFTGAANQRRGRFEQADGGTLFLDEIGDMPAD 248

Query: 240 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 299
            QT+LLR +  G F +VG      VDVR + AT++D    VQ G+FREDL++RL VI +H
Sbjct: 249 TQTRLLRVLADGEFYRVGGHTPVRVDVRIIAATHQDLETLVQAGKFREDLFHRLNVIRIH 308

Query: 300 LPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNV 359
           +P L  R +D+  +A   L   ++E   +   L  E  E  +   WPGNVRQL+N  R +
Sbjct: 309 IPRLSDRREDIPALAEHFLASAAQELSVETKVLKPETKEYLQHLPWPGNVRQLENTCRWI 368

Query: 360 VVLNEGREITLDMLPPPLNQMSAPINRA------------LPLAHENKVSVHEIFPLWMT 407
            V+  GRE+ +D LPP L    A    A              LA      + E  P +  
Sbjct: 369 TVMASGREVHVDDLPPELLNQQAEAQPAHNWEQALRNWSDQALARGQSNLLDEAVPAF-- 426

Query: 408 EKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKV 448
           E+  IE A++   G    AA  L    +T+ RK++    +V
Sbjct: 427 ERIMIETALKHTAGRRRDAALLLGWGRNTLTRKIKELGMRV 467