Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  291 bits (744), Expect = 4e-83
 Identities = 168/447 (37%), Positives = 251/447 (56%), Gaps = 7/447 (1%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED  S+  L    L    + +  + +  +A+ S+   EP L++ DLRLP   GM +L 
Sbjct: 11  LVEDDDSLRQLLVEELEDRGLQVRALASAEEAVGSLESWEPALVVSDLRLPGADGMALLR 70

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            VK        + +TA GSI  AV A++ GA +FL KP + +   + V  A+ +  +L++
Sbjct: 71  RVKSMQAAPAFLVITAFGSIQQAVAALKEGADEFLTKPLDLEHFGLAVARAL-ETRRLRD 129

Query: 121 DVDNKNQ-----NYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHA 175
           +V    Q      + G +G S+ M+ ++  I   A ++  + + GESGTGKE+ A A+HA
Sbjct: 130 EVRRFQQLLSDDRFHGMLGRSRVMRGLFDQIRQLARAEGPVLVIGESGTGKELVARAVHA 189

Query: 176 ASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCE 235
            S+R ++PF+AINCA +P +L+ESE FGHV GAFTGA    +G  + ADGGTLFLDE+ E
Sbjct: 190 ESERANRPFLAINCAGLPAELLESEFFGHVAGAFTGANRAHKGLFQQADGGTLFLDEIGE 249

Query: 236 MDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYV 295
           M L LQ KLLR +Q GT + VG+ +  +VDVR + A+NR    E     FREDL++RL  
Sbjct: 250 MPLPLQAKLLRVLQEGTIRPVGAERELTVDVRIIAASNRPLETEAGREAFREDLFFRLET 309

Query: 296 IPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNV 355
             L +PPLR R +D+  +A   +   +   G+    L+  V+ + R+Y +PGNVR+LQN 
Sbjct: 310 FILQVPPLRDREEDLELLAAGFVAHFAARSGRPVRGLAPAVLAQLRRYPFPGNVRELQNA 369

Query: 356 LRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFP-LWMTEKQAIEQ 414
           +   V    GR I L+ LP  +        R+       ++S   + P L   E + IE 
Sbjct: 370 IERAVTFCHGRSIELEHLPSRIADYRDDNARSAGAELLAQLSDGPLLPTLEELELRYIEH 429

Query: 415 AIEACDGNIPRAATYLDVSPSTIYRKL 441
            ++  DGN  RAA  L +   T+YR+L
Sbjct: 430 VLKLVDGNKRRAAALLGIGRRTLYRRL 456