Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Two-component response regulator PilR from Pseudomonas syringae pv. syringae B728a

 Score =  281 bits (720), Expect = 2e-80
 Identities = 167/444 (37%), Positives = 258/444 (58%), Gaps = 14/444 (3%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D   +  L    L  + +D        +A + + R   D+ L D+RLPD  G++++ 
Sbjct: 9   IVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQ 68

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIR-KASKLK 119
            ++   P VP+  +TAHG++DTA+ A++ GA DF+ KP +  RLR  VN+A+    ++  
Sbjct: 69  HIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPT 128

Query: 120 NDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKR 179
             +DN+       +G S  M+ +   I   A S+A I+I+GESG+GKE+ A  IH    R
Sbjct: 129 RSIDNR------LLGDSLAMRTLRSQIGKLARSQAPIYISGESGSGKELVARLIHEQGPR 182

Query: 180 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLD 239
            DKPFI +NC AIP +L+ESE FGH KG+F+GA  ++ G  +AA  GTLFLDE+ ++ L 
Sbjct: 183 IDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLPLA 242

Query: 240 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 299
           +Q KLLR IQ  + + VG  + + VDVR +CAT+++   EV  GRFR+DLYYRL VI + 
Sbjct: 243 MQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVR 302

Query: 300 LPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNV 359
           +P LR R +D+ ++A S+L  ++    +   RL+A+ +E  + Y +PGNVR+L+N+L   
Sbjct: 303 VPSLRERREDIDQLAASVLKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERA 362

Query: 360 VVLNEGREITLDMLPPPLNQMSAPINRALP-LAHENKVSVHEIFPLWMTEKQAIEQAIEA 418
             L E  EI    L   L + ++P     P LA  + +  +    L   E+Q I QA+E 
Sbjct: 363 YTLCENDEIHASDL--RLTESASPQENDGPSLADIDNLEDY----LESVERQLILQALEE 416

Query: 419 CDGNIPRAATYLDVSPSTIYRKLQ 442
              N   AA  L +S  ++  +L+
Sbjct: 417 TRWNRTAAAERLSLSFRSLRYRLK 440