Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., sigma-54-dependent transcription regulator protein from Sinorhizobium meliloti 1021

 Score =  281 bits (720), Expect = 3e-80
 Identities = 176/496 (35%), Positives = 266/496 (53%), Gaps = 53/496 (10%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP--DLILLDLRLPDMTGMDV 58
           +++D      L  + +  L    ++   GR  +E + R+    ++ILLDL +P+M G  +
Sbjct: 7   VIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLELLQRKGGIINVILLDLLMPEMNGHGL 66

Query: 59  LYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKL 118
           L A+ E+  D+P++  T  G I+T V+AM+ GA DFL+KP   +RL + + NA++ AS+ 
Sbjct: 67  LEALAERGIDIPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALKMASR- 125

Query: 119 KNDVDNKNQNYQGFIGSSQTMQA---VYRTID---SAASSKASIFITGESGTGKEVCAEA 172
              V    +   G +G    + A   + R ID    AA S   I + GESG GKE+ A A
Sbjct: 126 DGKVKTARRPRGGAVGFDDIVSASPAMIRVIDLARRAAQSNIPIVLEGESGVGKEMVARA 185

Query: 173 IHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDE 232
           I AAS R  KPF+ +NC AIP +L+ES LFGH KGAFTGA+ +  G    ADGGTLFLDE
Sbjct: 186 IQAASDRAAKPFVTVNCGAIPHNLVESILFGHEKGAFTGASEKHSGKFVDADGGTLFLDE 245

Query: 233 LCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYR 292
           + ++ LD+Q KLLR +Q G  + +G+ + + V+VR + ATN+D   EV+EGRFREDLYYR
Sbjct: 246 IGDLPLDVQVKLLRAVQQGEIETIGARQPQKVNVRLISATNKDLITEVREGRFREDLYYR 305

Query: 293 LYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKD-FVRLSAEVVERFRQYEWPGNVRQ 351
           L V P+ +P LR R +D+  +  + +   S E+  D  + +S+  +     Y+WPGN+RQ
Sbjct: 306 LNVFPITIPALRRRKEDIPVLVRAFVERFSAEQRLDQRLTVSSGAMALLTSYDWPGNIRQ 365

Query: 352 LQNVLRNVVVLNEGREITLDMLPPPLNQMSA-------------------PINRALPLAH 392
           L+N +   VVL +G E+T+   P    Q+                     P +  L  A 
Sbjct: 366 LENAIFRAVVLADGHELTVRDFPQVATQIPGYIVADRSGLSWGEAGPERRPASGQLAAAQ 425

Query: 393 --------------------ENKVSV----HEIFPLWMTEKQAIEQAIEACDGNIPRAAT 428
                               EN ++      E+  L   E++ I  A++   G + + A 
Sbjct: 426 ADAGAREQPAHSEQTPEGRLENAIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQVAR 485

Query: 429 YLDVSPSTIYRKLQTW 444
            L +  ST+YRKL+ +
Sbjct: 486 KLGIGRSTLYRKLKDY 501