Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., nitrogen assimilation regulatory protein from Sinorhizobium meliloti 1021

 Score =  288 bits (736), Expect = 4e-82
 Identities = 165/465 (35%), Positives = 258/465 (55%), Gaps = 24/465 (5%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           + +D A++  +    L+    D+ I          I   + DL++ D+ +PD    D+L 
Sbjct: 8   VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            +K+  PD+P++ M+A  +  TA++A   GA D+L KP +   L   +  A+ +  +  +
Sbjct: 68  RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPS 127

Query: 121 DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRG 180
            +++ +Q+    +G S  MQ +YR +     +  ++ ITGESGTGKE+ A A+H   KR 
Sbjct: 128 KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRR 187

Query: 181 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL 240
           + PF+AIN AAIP+DLIESELFGH KGAFTGA T   G  E A+GGTLFLDE+ +M +D 
Sbjct: 188 NGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDA 247

Query: 241 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 300
           QT+LLR +Q G +  VG       DVR V ATN+D  + + +G FREDLYYRL V+PL L
Sbjct: 248 QTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRL 307

Query: 301 PPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVV 360
           PPLR R +D+ ++    +   +++EG D  R   E +E  + + WPGNVR+L+N++R + 
Sbjct: 308 PPLRDRAEDIPDLVRHFVQ-QAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLT 366

Query: 361 VLNEGREITLDMLPPPLNQ--MSAPINRA------LPLAHENKVSVHEIFP--------- 403
            L     IT +++   L      +PI +A      L ++   + ++ + F          
Sbjct: 367 ALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPS 426

Query: 404 ------LWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
                 L   E   I  A+ A  GN  +AA  L ++ +T+ +K++
Sbjct: 427 GLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIR 471