Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  291 bits (746), Expect = 2e-83
 Identities = 172/457 (37%), Positives = 257/457 (56%), Gaps = 15/457 (3%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +++D +S+  +    L    I            +++   +P +I+ D+R+P   G+ +L 
Sbjct: 9   ILDDDSSIRWVLEKALKSARITSASFAAAESLWQALELSQPLVIVSDIRMPGTDGLTLLE 68

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            +    P +P++ MTAH  +D+AV A + GA ++L KP + D     V  A+  AS+   
Sbjct: 69  RIGLHYPHIPVIIMTAHSDLDSAVAAYQSGAFEYLPKPFDIDEAIALVERALTHASEQAP 128

Query: 121 DVDNKNQ-NYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKR 179
             +          IG +  MQ V+R I   + S  S+ I G+SGTGKE+ A A+H  S R
Sbjct: 129 QANTSEPVKAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHSPR 188

Query: 180 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLD 239
            DKPFIA+N AAIPKDLIESELFGH KGAFTGAA  RQG  E A+GGTLFLDE+ +M LD
Sbjct: 189 KDKPFIALNMAAIPKDLIESELFGHEKGAFTGAAGVRQGRFEQANGGTLFLDEIGDMPLD 248

Query: 240 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 299
           +QT+LLR +  G F +VG      VDVR + AT++D  + VQ+G+FREDL++RL VI +H
Sbjct: 249 VQTRLLRVLADGQFYRVGGHSPVQVDVRIIAATHQDLERLVQQGQFREDLFHRLNVIRVH 308

Query: 300 LPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNV 359
           LPPLR R +D+ ++    L   ++E G +   L+ E   + +Q  WPGNVRQL+N  R +
Sbjct: 309 LPPLRERREDIPQLTRHFLAAAAREIGVEAKILAKETAAKLQQLPWPGNVRQLENTCRWL 368

Query: 360 VVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQA-------- 411
            V+  G+EI    LPP L +     +    +A + + ++ +I    + E ++        
Sbjct: 369 TVMASGQEILPQDLPPELFKDPVVHHAGAVVAGDWESALRDIVDRRLGEGESDLLADMQP 428

Query: 412 ------IEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
                 +E A++   G+   AA  L    +T+ RKL+
Sbjct: 429 TFERIMLEVALKHTQGHKQEAARRLGWGRNTLTRKLK 465