Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  285 bits (730), Expect = 2e-81
 Identities = 167/416 (40%), Positives = 242/416 (58%), Gaps = 19/416 (4%)

Query: 32  AIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGA 91
           AI SI    PDL+  D +L  ++GMD+L  VK + PDV  +  TA+G+I  AV+A++ GA
Sbjct: 38  AIVSIKADTPDLVFSDWKLGQLSGMDLLNYVKREFPDVGFIMATAYGTITHAVDAIQAGA 97

Query: 92  QDFLIKPCEADRL-----RVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTI 146
            D+L KP +   L     +V  + A+RK +K  +   ++ Q+  G +G +  MQ V+  I
Sbjct: 98  DDYLTKPYQRQALLLAISKVARSQALRKENKALSLALSEQQSLVGLVGKAPCMQGVFDRI 157

Query: 147 DSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVK 206
              + + A++ I GESGTGKE+ A A+H  S+R   PFIAINC AIP+++ E+ELFG  K
Sbjct: 158 SRISGTDATVLIGGESGTGKELAARALHQLSRRAHMPFIAINCGAIPENIAEAELFGAEK 217

Query: 207 GAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDV 266
           GAFTGA   + G  EAA GGT+FLDE+ E+ L  QTKLLRF+Q GT  +VG+ K   +DV
Sbjct: 218 GAFTGATALKLGKLEAAHGGTVFLDEIGELPLLQQTKLLRFLQEGTITRVGAQKELQLDV 277

Query: 267 RFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEG 326
           R + AT+RD   EV E RFREDL+YRL V+P+ +PPLR R +D+  +    L   + + G
Sbjct: 278 RVIAATHRDLRLEVAEARFREDLFYRLNVVPVLMPPLRERREDIGRLVEHFLKLHASQYG 337

Query: 327 KDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINR 386
            D  ++S   +     Y WPGNVR+L N +   V+L +  E         L Q+S   ++
Sbjct: 338 FDQPKISPTALRFLLDYRWPGNVRELSNRIERFVLLGDEAE---------LMQVSEHASK 388

Query: 387 ALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
              L   ++    E F     E + + QA+   DGN  +AA +L +S      +L+
Sbjct: 389 EPGLQLPDEGIEWEAF-----EARCLSQAMARFDGNRTKAAKWLGMSYKAFLYRLE 439