Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  445 bits (1145), Expect = e-129
 Identities = 242/460 (52%), Positives = 309/460 (67%), Gaps = 22/460 (4%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP--DLILLDLRLPDMTGMDV 58
           MVED+ S A LY +YL    + + + GTG  A++ +       DL++LDL LPDM G+++
Sbjct: 6   MVEDSPSNAELYATYLRASGMTVTLAGTGGQALDYLVADASAFDLVVLDLGLPDMDGLEI 65

Query: 59  LYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKL 118
           L  +   +   P V +T  GS+  AVEAMR GA DFL+KPC AD+LR  V  A+ + +  
Sbjct: 66  LRKLGGPAAMPPTVVLTGSGSVRRAVEAMREGAIDFLVKPCGADKLRTAVEEALERRTPT 125

Query: 119 KN------DVDNKNQNYQGFIGSSQTMQAVYRTIDSAA-SSKASIFITGESGTGKEVCAE 171
                   D     +   GF+GSS  M  V+  I++AA SS AS+FITGE+GTGKE+CA 
Sbjct: 126 AEGRAPAADPTRAKRGPSGFLGSSPAMSNVFSLIEAAAASSTASVFITGETGTGKELCAN 185

Query: 172 AIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLD 231
           AIH  S R + PF+AINC AIP++L+ESE+FGH KGAFTGA  +R+GAA  ADGGTLFLD
Sbjct: 186 AIHNLSDRRNGPFVAINCGAIPRELMESEIFGHRKGAFTGAINDREGAASRADGGTLFLD 245

Query: 232 ELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYY 291
           ELCEMDLDLQ KLLRFIQTGT++KVG    + V++RFVCATNRDP  EV+ GRFREDLYY
Sbjct: 246 ELCEMDLDLQVKLLRFIQTGTYRKVGDGADRQVNIRFVCATNRDPLVEVKAGRFREDLYY 305

Query: 292 RLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQ 351
           RLYV+P+HLPPL ARGDD+I +A   L   SK EGK F   SA+ + R   Y WPGNVRQ
Sbjct: 306 RLYVVPIHLPPLSARGDDIILLARRFLADFSKLEGKRFQEFSADALGRIMAYRWPGNVRQ 365

Query: 352 LQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHEN---------KVSVHEIF 402
           L+NV+RN+VVLN+G  +   MLPPPL+ + A +  +LP+  ++          +S+ EI 
Sbjct: 366 LENVVRNIVVLNDGVTVEPTMLPPPLDCVEAVV--SLPVDPQSATGAVVGGGTLSLDEIL 423

Query: 403 --PLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRK 440
             PL   E  AI+ A+   D N+ RAA  LDVSPSTIYRK
Sbjct: 424 ARPLAELEAMAIDAALRLSDNNVTRAARLLDVSPSTIYRK 463