Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) from Shewanella loihica PV-4

 Score =  280 bits (716), Expect = 7e-80
 Identities = 173/460 (37%), Positives = 258/460 (56%), Gaps = 20/460 (4%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +++D +S+  +    L    I            +++ + +P +I+ D+R+P   G+ +L 
Sbjct: 7   VLDDDSSIRWVVERALKGAKISCASFAAAESLWQALEQTQPQVIISDIRMPGTDGLTLLD 66

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            ++   P +P++ MTAH  +D+AV A + GA ++L KP + D     V  A+  A +   
Sbjct: 67  RLQLHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAIGLVERALSHAKEQSP 126

Query: 121 DVDNKNQ-NYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKR 179
            V ++ +      IG +  MQ V+R I   + S  S+ I G+SGTGKE+ A A+H  S R
Sbjct: 127 KVISQPEVKAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHSPR 186

Query: 180 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLD 239
            DKPFIA+N AAIPK+LIESELFGH KGAFTGAA  RQG  E ADGGTLFLDE+ +M LD
Sbjct: 187 KDKPFIALNMAAIPKELIESELFGHEKGAFTGAANVRQGRFEQADGGTLFLDEIGDMPLD 246

Query: 240 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 299
           +QT+LLR +  G F ++G      VDVR + AT+++    V +G FREDL++RL VI +H
Sbjct: 247 VQTRLLRVLADGQFYRIGGHSPVQVDVRIIAATHQNLESLVAKGDFREDLFHRLNVIRVH 306

Query: 300 LPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNV 359
           LPPL  R +D+ ++A   L   +KE   +   L+    +      WPGNVRQL+N  R +
Sbjct: 307 LPPLSQRREDIPQLARHFLATAAKEISVEPKILTKATADTLASLPWPGNVRQLENTCRWL 366

Query: 360 VVLNEGREITLDMLPPPL-----NQMSAP------INRALPLAHENKVS------VHEIF 402
           +V+  G+EI    LPP L     +  S+P         AL    + ++S      + +I 
Sbjct: 367 MVMASGQEILPQDLPPELLTPSNSHDSSPQAGSGGWQEALTQWIDQRLSEGESDLLTQIQ 426

Query: 403 PLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
           P +  EK  +E A++   G+   AA  L    +T+ RKL+
Sbjct: 427 PAF--EKILLETALKHTKGHKQEAAKRLGWGRNTLTRKLK 464