Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  296 bits (758), Expect = 9e-85
 Identities = 171/451 (37%), Positives = 255/451 (56%), Gaps = 20/451 (4%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED     AL    LT     +    +   AI  I    PDL+  D +L  +TGMD+L 
Sbjct: 10  VVEDEPDQRALIVQMLTANQYLVESADSVEQAIVMIKASAPDLVFSDWKLGQLTGMDLLN 69

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNN-----AIRKA 115
            V+ + PD+  +  TA+G+I  AV+AM+ GA D+L KP +   L + +       A+++ 
Sbjct: 70  YVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAIEKVAKSIALKRQ 129

Query: 116 SKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHA 175
           ++  +   ++ Q   G +G S  MQ VY+ +   +++ A++ I GESGTGKE+ A A++ 
Sbjct: 130 NRRLSSELSQQQELVGLVGRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAARALYQ 189

Query: 176 ASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCE 235
            S R  KPF+AINC AIP+ L E+ELFG  KGA+TGA T++ G  EAADGGT+FLDE+ E
Sbjct: 190 LSARSHKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFLDEIGE 249

Query: 236 MDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYV 295
           + L  QTKLLRF+Q G   ++G +    +DVR + AT+RD  +EV EGRFREDLYYRL V
Sbjct: 250 LPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLYYRLNV 309

Query: 296 IPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNV 355
           +P+H+P LR R +D+  +    L   + + G +  +LS + ++    + WPGNVR+L N 
Sbjct: 310 VPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVRELANR 369

Query: 356 LRNVVVLNEGREIT--LDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIE 413
           +   V+L +  E+   L   P PL+         LP A     S          EK  + 
Sbjct: 370 IERFVLLGDEEEMVQELGAAPQPLDTK----RFVLPEAGIEWESF---------EKDCLR 416

Query: 414 QAIEACDGNIPRAATYLDVSPSTIYRKLQTW 444
           QA++  +GN  +AA  L +S      +L+ +
Sbjct: 417 QALDRFEGNRTKAAKCLGLSYKAFLYRLEKY 447