Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  290 bits (741), Expect = 9e-83
 Identities = 163/385 (42%), Positives = 230/385 (59%), Gaps = 11/385 (2%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D A+  ++ R+ L            G  A+  + +R  D +L+D+R+  M G+  L 
Sbjct: 8   IVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARMDGIAALR 67

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI---RKASK 117
            + + +P  P++ MTA  S+DTAVEA+R GA D+LIKP + D LR T+  A+   R AS+
Sbjct: 68  HILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALDHTRLASE 127

Query: 118 LKNDVDNKNQN--------YQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVC 169
            +   +  +            G IG S  M  +   I + A S+A++ ITGESGTGKE+ 
Sbjct: 128 NRELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGESGTGKELV 187

Query: 170 AEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLF 229
           A A+HAAS R  KP + +NCAA+ + L+ESELFGH +GAFTGA   R+G    ADGGTLF
Sbjct: 188 ARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQADGGTLF 247

Query: 230 LDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDL 289
           LDE+ EM L LQ KLLR +Q G  Q+VGS    +VDVR + ATNRD  +E   GRFREDL
Sbjct: 248 LDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAAGRFREDL 307

Query: 290 YYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNV 349
           YYRL VI +H+P LR R  DV  +A   L   +++  K     + + ++   +++WPGNV
Sbjct: 308 YYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLRHDWPGNV 367

Query: 350 RQLQNVLRNVVVLNEGREITLDMLP 374
           R+L+N +   V+L  G  +T   LP
Sbjct: 368 RELENAIERAVILATGDYVTERELP 392