Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  275 bits (702), Expect = 3e-78
 Identities = 169/449 (37%), Positives = 243/449 (54%), Gaps = 5/449 (1%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED  S+    +  L+    ++   G    A + + +R  DL++ DLRLP M GM++L 
Sbjct: 8   LVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNGMELLE 67

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            + E  P   ++ +TA   ++ AV+A++ GA DFL KP   D L + V    R     + 
Sbjct: 68  GICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFRFLDLKRE 127

Query: 121 DVDNKNQNYQG-FIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKR 179
           +   + +   G FIG S  M  V+  I + A S   + + G SG+GKE+ A A+H  SKR
Sbjct: 128 NARLRGERDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAGALHRLSKR 187

Query: 180 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLD 239
            DKPFI INCAA+P+ L+ESELFGH KGAFTGA   R+G  EAADGGTLF DE  EM L 
Sbjct: 188 RDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFDEAGEMPLA 247

Query: 240 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 299
           +Q KLLR ++      VG +  + VDVR V AT RD  + +  G FREDLYYR+ V+P+ 
Sbjct: 248 VQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYYRINVVPVT 307

Query: 300 LPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNV 359
           LPPLR RG DV  +A   L     +  +  V  S +       Y++PGNVR+L+N +   
Sbjct: 308 LPPLRERGGDVALLAERFLRRFCAQHDRQ-VTFSEQARNALLAYDYPGNVRELRNAIERA 366

Query: 360 VVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEAC 419
           V+L    +I +  LP  +   +       P   E    V     +   EK+ I +A++  
Sbjct: 367 VILCAEDKIHVGHLPKRIRDATQASQEQQP---EETRFVQLADGVAQFEKKRILEALQKT 423

Query: 420 DGNIPRAATYLDVSPSTIYRKLQTWNEKV 448
            G   RAA  L ++   ++ KL+  + K+
Sbjct: 424 GGRRIRAAELLGITRKQLWLKLKELDIKL 452