Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  270 bits (690), Expect = 6e-77
 Identities = 146/360 (40%), Positives = 222/360 (61%), Gaps = 9/360 (2%)

Query: 29  GRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFM-TAHGSIDTAVEAM 87
           G+  +  I +R PD++LLDL+LPD +G +VL  V +  P  PI  M +AHG    AVEA+
Sbjct: 36  GKSGLTEIEKRTPDVVLLDLKLPDQSGFEVLDQV-QALPAPPITIMISAHGDTRAAVEAV 94

Query: 88  RHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQ---NYQGFIGSSQTMQAVYR 144
           + GAQD++ KP + D L + +     K  +L  +V  + +   +  G +G S  M+ +  
Sbjct: 95  KKGAQDYITKPFDLDELILLIQRN-HKHRQLTEEVAYRREREADVHGLVGHSSAMRKLLD 153

Query: 145 TIDSAASSKA-SIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFG 203
            ++    S A ++ + G SG+GK + A+A+HA   R   PF+++NCA++P++L+E+ELFG
Sbjct: 154 QVERIGKSSARTVLLQGPSGSGKTLIAKALHATKDRA-APFVSVNCASLPENLLEAELFG 212

Query: 204 HVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKS 263
             KGA+TGA   R G  E A+GGTLFLDE+ E+ L LQ KLL F++T  F+ VG  K   
Sbjct: 213 AEKGAYTGADKRRTGLVELANGGTLFLDEIGELPLPLQAKLLTFLETHRFRAVGGQKEIE 272

Query: 264 VDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSK 323
            D+R + A+NRD   E Q G FREDL+YRL V+PL +P L  R DD+  +A +    ++ 
Sbjct: 273 ADLRVIAASNRDLQTEAQTGAFREDLFYRLNVMPLTIPSLAERRDDIPMLASNFATGLAA 332

Query: 324 EEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAP 383
           +EG   + LS+E +     Y+WPGN+R+L+N +  + +L+ G  I +D LPP + + SAP
Sbjct: 333 QEGCRPINLSSETLTTLCNYDWPGNIRELRNTIERLTILHAGESINVDQLPPEITK-SAP 391