Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., nitrogen regulation protein NR(I) (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  290 bits (741), Expect = 9e-83
 Identities = 176/460 (38%), Positives = 255/460 (55%), Gaps = 20/460 (4%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +++D +S+  +    L    +            +++   +P +I+ D+R+P   G+ +L 
Sbjct: 9   ILDDDSSIRWVLEKALQGAKLSTASFAAAESLWQALEISQPRVIVSDIRMPGTDGLTLLE 68

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLK- 119
            ++   P +P++ MTAH  +D+AV A + GA ++L KP + D     V  A+  A++   
Sbjct: 69  RLQIHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAISLVERALTHATEQSP 128

Query: 120 NDVDNKNQ-NYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASK 178
             V  + Q      IG +  MQ V+R I   + S  S+ I G+SGTGKE+ A A+H  S 
Sbjct: 129 TPVAQETQVKTPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHSP 188

Query: 179 RGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDL 238
           R DKPFIA+N AAIPKDLIESELFGH KGAFTGAA  RQG  E A+GGTLFLDE+ +M L
Sbjct: 189 RKDKPFIALNMAAIPKDLIESELFGHEKGAFTGAANVRQGRFEQANGGTLFLDEIGDMPL 248

Query: 239 DLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPL 298
           D+QT+LLR +  G F +VG      VDVR + AT++D  + V +G FREDL++RL VI +
Sbjct: 249 DVQTRLLRVLADGQFYRVGGHSAVQVDVRIIAATHQDLEQLVLKGGFREDLFHRLNVIRI 308

Query: 299 HLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRN 358
           HLPPL  R +D+ ++A   L   +KE G +   L+ E   +  Q  WPGNVRQL+N  R 
Sbjct: 309 HLPPLSQRREDIPQLASHFLASAAKEIGVEAKILTKETAAKLSQLPWPGNVRQLENTCRW 368

Query: 359 VVVLNEGREITLDMLPPPLNQMSAPINRAL----------------PLAHENKVSVHEIF 402
           + V+  G+EI    LPP L +    IN                    L+  N   + E+ 
Sbjct: 369 LTVMASGQEILPQDLPPELLKEPTSINPMAKGSQDWQSALTEWIDQKLSEGNSDLLTEVQ 428

Query: 403 PLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
           P +  E+  +E A+    G+   AA  L    +T+ RKL+
Sbjct: 429 PAF--ERILLETALRHTQGHKQEAAKRLGWGRNTLTRKLK 466