Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  283 bits (724), Expect = 9e-81
 Identities = 173/474 (36%), Positives = 246/474 (51%), Gaps = 41/474 (8%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPD-----MTG 55
           +VED   V    R  L     D+++ G+  +A+       P ++ LDL LP        G
Sbjct: 6   IVEDNEDVRRQLRWGLAKEPYDLHLAGSVDEALALQREHAPAVVTLDLGLPPDAEGASEG 65

Query: 56  MDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNA---- 111
              L A+ +  P   ++ +T H  ++ A+ A+  GA DF  KP + + L+V ++ A    
Sbjct: 66  FRGLAALLDHDPRTKVIVVTGHHDMENALRAIEGGAYDFCQKPADLEMLKVIISRAFFLH 125

Query: 112 -------------IRKASKLKNDVD----------NKNQNYQGFIGSSQTMQAVYRTIDS 148
                        +  AS   +  D            +  +QG +G   +M+AV+ T+  
Sbjct: 126 GLQGGGAMASASGMASASGGASAPDAVSGAGAGGGKPDDGWQGIVGRCPSMRAVFETVAK 185

Query: 149 AASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGA 208
            A + A + +TGESGTGKE+ A AIHA   R  + F+AINC AIP +L+E+E FG+ KGA
Sbjct: 186 VAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCGAIPDNLLEAEFFGYEKGA 245

Query: 209 FTGAATERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRF 268
           FTGA    QG  E ADGGTLFLDE+ E+  +LQ KLLRF+Q    Q+VG  K  +VD R 
Sbjct: 246 FTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEKVIQRVGGRKDIAVDARI 305

Query: 269 VCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKD 328
           V ATNRD   E+  GRFREDLYYR+ V+P+ LPPLRARGDD++ +A   L   + E   +
Sbjct: 306 VAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDILLLARHFLESSAGEGTGN 365

Query: 329 FVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRAL 388
            V  S    +   +Y WPGNVR+L+N +R  V+   GR I    +P  L     P   A 
Sbjct: 366 IVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASGRRI----MPDDLGFDETPAKAAA 421

Query: 389 PLAHENKVSVHEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
           P    +             E+  +  A++ C GNI +A+  + VS  T Y  L+
Sbjct: 422 PRPEGSLREARNAL-----ERDMVLSALDKCGGNIVQASLAIGVSRPTFYDLLR 470