Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., sigma-54 dependent DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  272 bits (695), Expect = 2e-77
 Identities = 167/438 (38%), Positives = 242/438 (55%), Gaps = 17/438 (3%)

Query: 23  INIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDT 82
           +++  +G +A+  I      L+L DLR+PDM GM+++       P   ++ +TAHGSI+T
Sbjct: 35  VSVALSGAEALHIIQGSGVALLLTDLRMPDMDGMELMQQAMTVDPTTSVILLTAHGSIET 94

Query: 83  AVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQG-----FIGSSQ 137
           AV A+++GA DFL KP   + L+ T+N A+ +   LK +   +    QG      IG S 
Sbjct: 95  AVAALKNGAYDFLTKPVRREELQRTLNKALERIRILKENKRLRQMMQQGCIERQMIGESP 154

Query: 138 TMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLI 197
            MQ +  TI + A++  S+ I GESGTGKE+ A+ +H    R ++P + +NC +IP  L+
Sbjct: 155 VMQRLKETIAAIAATDYSVLIRGESGTGKELVADMLHRLGSRRERPLVKVNCPSIPDQLL 214

Query: 198 ESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVG 257
           ESELFGHVKGAFTGA   R+G   +A  GTL LDE+ ++   LQTKLLR +Q    + VG
Sbjct: 215 ESELFGHVKGAFTGADRTRRGLFMSAQRGTLLLDEIGDIGEALQTKLLRVLQEREIRPVG 274

Query: 258 SSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSL 317
           SS    VDVR + +TNR   + +++G FREDL+YRL V+ +H PPLR R DD+  +A   
Sbjct: 275 SSASTLVDVRIIASTNRALEERIKQGLFREDLFYRLNVLTIHTPPLRERRDDIPLLADHF 334

Query: 318 LGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREIT---LDMLP 374
           +    +E      R+S   +      EWPGNVR+LQN +R +VV   G  I    L ++ 
Sbjct: 335 VAATCRELSSPVKRISPGALACLAGREWPGNVRELQNYIRRLVVFCPGDTIDTAHLRLVD 394

Query: 375 PPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDGNIPRAATYLD--- 431
                 +A     +P   E K +V E F      ++ +E  +    GNI  AA       
Sbjct: 395 GTTCPTTAETPSLVPY-KEAKGAVVEDF-----TRRYVEGLLRQTGGNISEAARLSGIER 448

Query: 432 VSPSTIYRKLQTWNEKVK 449
           VS   I R+L T  +  K
Sbjct: 449 VSLQKILRRLGTSGDTFK 466