Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  277 bits (709), Expect = 5e-79
 Identities = 153/473 (32%), Positives = 254/473 (53%), Gaps = 26/473 (5%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D   +   ++  L     D+    +G   +  +    P+ +++D+R+P M G+D L 
Sbjct: 6   IVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLDALK 65

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
           A++E    +P++ MTA+ + +TA+EA + GA D+++KP +   +   ++ A+    +++ 
Sbjct: 66  ALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVEAGRRMRG 125

Query: 121 DV-----DNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHA 175
            V          + +  +G+S+ M  VY+ I  AA + A + + GESGTGKE+ A AI+ 
Sbjct: 126 RVAMTPEPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKELVARAIYQ 185

Query: 176 ASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCE 235
            S R ++P++ INC AIP  L+ESELFG+ KGAFTGA   R G  E A GGT+FLDE+ +
Sbjct: 186 HSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGTVFLDEIGD 245

Query: 236 MDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYV 295
           M L +Q KLLR +Q    +++G  +   VDVR + ATN D    V +GRFREDLYYRL V
Sbjct: 246 MPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFREDLYYRLKV 305

Query: 296 IPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNV 355
           + L LPPLR R +D+  +A   L   ++E       +S E +     + WPGNVR+L N 
Sbjct: 306 VTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPGNVRELGNA 365

Query: 356 LRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWM--------- 406
           ++  +V N G      +LP  + Q    +  +      ++ +  ++  L           
Sbjct: 366 IQKALVFNRG----APLLPEDIRQALEGVRGSTSTREGDEGAGDDLLQLVRRTLSGGDDN 421

Query: 407 --------TEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEK 451
                     +  + +A++   GN  RAA  L +S  T+  +++ +  KV+++
Sbjct: 422 AFETIMDHVGRIVVREALQYTGGNRTRAARLLGMSRPTLLARMERYGLKVEQQ 474