Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  296 bits (757), Expect = 1e-84
 Identities = 167/450 (37%), Positives = 260/450 (57%), Gaps = 10/450 (2%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +++D  +   +  + LT     +  +     A+  +   E D+++ D+++P +TG +VL 
Sbjct: 9   VIDDEKNYLLVLEALLTDAGYAVTALNDPETALAFLEESEVDVVITDMKMPRVTGREVLE 68

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI------RK 114
            VK+  P +P+  MTA GSI+ AV+ M++GA D++ KP   D L ++V NA       R+
Sbjct: 69  RVKKTWPHIPVCIMTAFGSIEGAVDVMKYGAFDYITKPFSNDELLLSVQNAAELSRVHRQ 128

Query: 115 ASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIH 174
              L+ +++ +   +Q  IG S+ ++ V   +D AA S++++ ITGESGTGKE+ A AIH
Sbjct: 129 YRALRANLEERYGTHQ-IIGRSKAIREVLDMVDRAAPSRSTVLITGESGTGKELVARAIH 187

Query: 175 AASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELC 234
            +S R   PF+++NC A+   ++ESELFGH KG+FTGA   R+G  E ADGGTLFLDE+ 
Sbjct: 188 FSSPRNSGPFVSVNCMALNPGVLESELFGHEKGSFTGAMAMRRGRFEQADGGTLFLDEIG 247

Query: 235 EMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLY 294
           E+  +LQ KLLR +Q   F++VG      VD+R V ATN+D  KEV+ G FREDLYYRL 
Sbjct: 248 ELTPELQVKLLRVLQERRFERVGGGDEIEVDIRVVAATNKDLQKEVENGTFREDLYYRLN 307

Query: 295 VIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQN 354
           V+ + LPPLR R +D+  +    +  ++++ G      + E  +    YEWPGN+RQLQN
Sbjct: 308 VVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPKTFTPEAHDYLTGYEWPGNIRQLQN 367

Query: 355 VLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQ 414
           V+   +VL     + +D LPP +    + +  A+ L     V +     L   E   I +
Sbjct: 368 VVERCLVLVASDTVGVDDLPPEIRDEESQLKSAVDLL---PVRLDLADTLEKIEAALIRR 424

Query: 415 AIEACDGNIPRAATYLDVSPSTIYRKLQTW 444
           A+   +    +AA  L +S S +  KL+ +
Sbjct: 425 ALVRAEFVQVKAAELLGISKSLLQYKLKKY 454