Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  291 bits (746), Expect = 2e-83
 Identities = 166/454 (36%), Positives = 255/454 (56%), Gaps = 12/454 (2%)

Query: 2   VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYA 61
           V+D  S+  L    L+     +++ G+ R A E + R   ++++LD+RLPD  G++ +  
Sbjct: 10  VDDEPSIGKLLEKELSTPARAVHVAGSARQARERLRRATYEVVVLDIRLPDADGIEFMVE 69

Query: 62  VKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKND 121
           ++++ PD+ ++ +T HG+ID AVEAM+ GA D++ KP     L V V  A ++A     +
Sbjct: 70  LRQRYPDMEVILITGHGNIDNAVEAMKLGAYDYITKPFNLTELEVVVERAYQRAFLRNEN 129

Query: 122 VDNKNQNYQG-----FIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAA 176
              ++ + +G      IG+SQ ++ V   I+  A +   + ITGESG GKEV A AI + 
Sbjct: 130 RALRHAHDRGRPGVTLIGNSQVIKEVRYLIEKVAPTDVPVLITGESGAGKEVAAHAIQSL 189

Query: 177 SKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEM 236
             R DKPFI  NCA + K+L  SELFGHV+G+FTGA   R G    A+ GTLFLDE+ E+
Sbjct: 190 GTRADKPFIIKNCATLQKELARSELFGHVRGSFTGALESRDGLMAFANKGTLFLDEIGEL 249

Query: 237 DLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVI 296
            +++Q  LLR ++  T+++VG    +S D+R + ATNR    EV+ GRF E LY+R+ V 
Sbjct: 250 PMEVQASLLRVLENKTYRRVGEKDHRSCDIRLIFATNRTLAGEVEAGRFHEALYHRINVF 309

Query: 297 PLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVL 356
            + +PPLR R +D+  +A   L  +    G+D +R+S   +    QY WPGNVR+L+NVL
Sbjct: 310 NIEMPPLRERKEDIPLLAEFFLARLG--NGRDDLRISDRAMSCLMQYAWPGNVRELRNVL 367

Query: 357 RNVVVLNEGREITLDMLPPPLNQMSAPIN-----RALPLAHENKVSVHEIFPLWMTEKQA 411
              ++L E   IT   LP  L   +           +P A            L   E++ 
Sbjct: 368 ERSIILAENNLITEHALPRDLAGFAGGGGGQSGVSGVPGASGAMGEAQGPLSLEAMEREH 427

Query: 412 IEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWN 445
           I + +E  D N   AAT L +S  T+YRK++ ++
Sbjct: 428 IARILEFYDNNRSLAATALGISRKTLYRKMREYD 461