Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  290 bits (741), Expect = 9e-83
 Identities = 161/449 (35%), Positives = 261/449 (58%), Gaps = 10/449 (2%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +++D      + R+ +  +   +   G+G + +E +   +  ++LLD+R+P M G + L 
Sbjct: 6   VIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHEQVHVVLLDMRMPGMDGQETLA 65

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            + E  P +P+V +TA+G++ +AVEAM+ GA D+L KP + + L   +  A      +  
Sbjct: 66  RILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEHRRLVVE 125

Query: 121 DVDNKNQNYQG-----FIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHA 175
           + + + +  +       +G+SQ M  +   I  A  S+A++ I GESGTGKE+ A+A+H 
Sbjct: 126 NEELRKRYVENDPTAPLVGASQVMHRMRDFIRQAGPSEATVLIMGESGTGKELIAQALHD 185

Query: 176 ASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCE 235
           AS R  +P + +NCAA+P  L+ESELFG+V+GAFTGA  ++ G  + A GGTLFLDE+ E
Sbjct: 186 ASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKPGRFQLARGGTLFLDEIGE 245

Query: 236 MDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYV 295
           + L+LQ KLLR +Q    + +G  +  SVDVR + ATNRD  +EV +G FREDLY+RL V
Sbjct: 246 LPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNRDLRREVAKGTFREDLYFRLNV 305

Query: 296 IPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNV 355
           + +  PPLR R +D+ ++   LLG + ++  K    +SA+  E   ++ WPGNVR+L+NV
Sbjct: 306 LEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISADFFEALSRHSWPGNVRELENV 365

Query: 356 LRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFP--LWMTEKQAIE 413
           L   ++L+    ++ D LPP   Q+     +   +  E  V   +  P  L   EK  + 
Sbjct: 366 LERALILSRTDSLSADALPP---QLFGDEPQVADMQQERPVVDDDSRPCSLDEAEKGELL 422

Query: 414 QAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
           +A++   G+  + A  L +S  T+  KL+
Sbjct: 423 RALDVHGGHREKTADALGISRRTLQYKLK 451