Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., AAA-family response regulator tacA from Caulobacter crescentus NA1000

 Score =  297 bits (761), Expect = 4e-85
 Identities = 177/481 (36%), Positives = 261/481 (54%), Gaps = 30/481 (6%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP-DLILLDLRLPDMTGMDVL 59
           +V+D  +   L ++ L      ++    G  AI  +    P D+ILLDL +P + G D L
Sbjct: 7   VVDDDPTQRRLIQAVLERDGFAVSHAEGGDAAIAHLTSGAPADVILLDLVMPGLNGQDAL 66

Query: 60  YAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLK 119
             ++ +  + P++ +TA G +DT V+AM+ GA DF IKP   +R+ V++ NA+     LK
Sbjct: 67  KEMRARGFNQPVIVLTASGGVDTVVKAMQAGACDFFIKPASPERITVSIRNALSMGD-LK 125

Query: 120 NDVDNKNQNYQG------FIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAI 173
            +V+   +   G       IG+S  M  V R  + AA S   + ITGESG GKE+ A A+
Sbjct: 126 GEVERLTKRAGGKTTFADLIGASPVMTMVKRMGERAAKSGIPVLITGESGVGKELIARAV 185

Query: 174 HAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDEL 233
           H +S R  KPF+A+NC AIP++L+ES LFGH KG+FTGA  +  G  + ADGGTLFLDE+
Sbjct: 186 HGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFKEADGGTLFLDEV 245

Query: 234 CEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRL 293
            E+ LD+Q KLLR +Q G    +GS +   VDVR V ATNRD  + V  GRFREDL+YRL
Sbjct: 246 GELPLDMQVKLLRALQEGEIDPIGSKRSIKVDVRIVSATNRDLQQAVSGGRFREDLFYRL 305

Query: 294 YVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQ 353
            V P+  P LR R +D+  +  + +   + EEGK  +  S E ++    ++WPGNVRQL+
Sbjct: 306 NVFPIEAPSLRERREDIPALVEAFIRRFNVEEGKRVIGASPETMQLLTSFDWPGNVRQLE 365

Query: 354 NVLRNVVVLNEG------------------REITLDMLPPPLNQMSAPINRALPLAHENK 395
           N +   +VL +                     +++   PPP   + A          E  
Sbjct: 366 NTVYRAIVLADAPYLQPFDFPAISGLAAPIEAVSISPSPPPAALLQATHAAMAAAVAEAP 425

Query: 396 VSVHE----IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEK 451
           V + +    +  L   E+  I+ AI+   G++   A  L +  ST+YRK++    +V  K
Sbjct: 426 VRILDDRGHLRTLEEIERDLIQHAIDVYAGHMSEVARRLGIGRSTLYRKVREQGIEVDMK 485

Query: 452 E 452
           E
Sbjct: 486 E 486