Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  516 bits (1330), Expect = e-151
 Identities = 256/483 (53%), Positives = 334/483 (69%), Gaps = 34/483 (7%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED+ S+ ALY  YL   DI++  V  G DA++ +   +PDL++LD++LPDM+G+D+L 
Sbjct: 7   LVEDSMSLGALYTEYLRAEDINVTHVHYGADALKELSNWQPDLLILDIKLPDMSGLDILK 66

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            V++  P +  + +TAHGSID A++AMR GA DFL+KP +A RL +TV NA+++   L+ 
Sbjct: 67  QVQQSHPHISTIMITAHGSIDIAIDAMRSGAFDFLVKPFDAKRLSITVRNALKQKQLLEL 126

Query: 121 DVDNKNQ----NYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAA 176
               +N     +YQGFIG S  MQ+VY+TID  A+SKAS+FI GESGTGKEVCA+AIH  
Sbjct: 127 VTQYENSLPKGHYQGFIGDSLAMQSVYKTIDCVANSKASVFIMGESGTGKEVCAQAIHQV 186

Query: 177 SKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEM 236
             R DKPFIA+NCA+IPK+LIESE+FGH KGAFTGA   R GAA  ADGGTLFLDE+CEM
Sbjct: 187 GNRADKPFIALNCASIPKELIESEIFGHCKGAFTGAHNNRDGAATRADGGTLFLDEICEM 246

Query: 237 DLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVI 296
           DL+LQ+KLLRFIQTGTFQ+VG SK + VD+RF+ ATNR+PW+EV+ G FREDL+YRL+VI
Sbjct: 247 DLELQSKLLRFIQTGTFQRVGGSKEEHVDIRFISATNREPWEEVKLGHFREDLFYRLHVI 306

Query: 297 PLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVL 356
           P+ LPPLRARG+DV+ +A  LL   SKEEGK F+  + +     + Y+WPGNVRQLQNV+
Sbjct: 307 PIELPPLRARGNDVLLLAKQLLKTYSKEEGKKFIDFNPQAAAMLQAYDWPGNVRQLQNVI 366

Query: 357 RNVVVLNEGREITLDMLPPPLNQMSAP------------------------------INR 386
           R +VVLN+   +   M P PL  ++ P                              ++ 
Sbjct: 367 RQIVVLNDASHVEPSMFPTPLKPLAQPQTKAQLQTKMQVEATKVDIDTLVQVASRELLSE 426

Query: 387 ALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNE 446
           +   AH +      I PLW+TEKQ IE AI  CDGN+P+AA  LD+SPSTIYRK  TW E
Sbjct: 427 STQEAHTHTADQQRIQPLWLTEKQTIEGAIALCDGNVPKAAALLDISPSTIYRKRMTWEE 486

Query: 447 KVK 449
           + +
Sbjct: 487 QAE 489