Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) from Shewanella sp. ANA-3

 Score =  286 bits (733), Expect = 8e-82
 Identities = 174/460 (37%), Positives = 254/460 (55%), Gaps = 20/460 (4%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +++D +S+  +    L    +            +++   +P +I+ D+R+P   G+ +L 
Sbjct: 7   ILDDDSSIRWVLEKALQGAKLSTASFAAAESLWQALEISQPRVIVSDIRMPGTDGLTLLE 66

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            ++   P +P++ MTAH  +D+AV A + GA ++L KP + D     V  A+  A++   
Sbjct: 67  RLQIHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAISLVERALTHATEQSP 126

Query: 121 DVDNKNQNYQG--FIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASK 178
               +    +    IG +  MQ V+R I   + S  S+ I G+SGTGKE+ A A+H  S 
Sbjct: 127 APAAQETQVKTPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHSP 186

Query: 179 RGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDL 238
           R DKPFIA+N AAIPKDLIESELFGH KGAFTGAA  RQG  E A+GGTLFLDE+ +M L
Sbjct: 187 RKDKPFIALNMAAIPKDLIESELFGHEKGAFTGAANVRQGRFEQANGGTLFLDEIGDMPL 246

Query: 239 DLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPL 298
           D+QT+LLR +  G F +VG      VDVR + AT++D  + V +G FREDL++RL VI +
Sbjct: 247 DVQTRLLRVLADGQFYRVGGHSAVQVDVRIIAATHQDLEQLVLKGGFREDLFHRLNVIRV 306

Query: 299 HLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRN 358
           HLPPL  R +D+ ++A   L   +KE G +   L+ E   +  Q  WPGNVRQL+N  R 
Sbjct: 307 HLPPLSQRREDIPQLATHFLASAAKEIGVEAKILTKETAAKLSQLPWPGNVRQLENTCRW 366

Query: 359 VVVLNEGREITLDMLPPPLNQMSAPINRAL----------------PLAHENKVSVHEIF 402
           + V+  G+EI    LP  L +  A IN                    L+  N   + E+ 
Sbjct: 367 LTVMASGQEILPQDLPQELLKEPASINPMAKGSQDWQSALTEWIDQKLSEGNSDLLTEVQ 426

Query: 403 PLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
           P +  E+  +E A+    G+   AA  L    +T+ RKL+
Sbjct: 427 PAF--ERILLETALRHTQGHKQEAAKRLGWGRNTLTRKLK 464