Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., Excinuclease ABC subunit B from Pseudomonas fluorescens FW300-N2E2

 Score =  957 bits (2474), Expect = 0.0
 Identities = 483/671 (71%), Positives = 573/671 (85%), Gaps = 7/671 (1%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F+LV+ +QPAGDQP AI+ ++EG+EAGLAHQTLLGVTGSGKTF++ANVIA  QRPT++LA
Sbjct: 4   FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTLVLA 63

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTLAAQLYGE KAFFPNNAVEYFVSYYDYYQPEAYVP++DTFIEKDAS+N HIEQMRL
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           SATKALLERKDA+IV +VS IYGLG P++YLKM+LH+ RGD ++QR +LRRLA+LQY+RN
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           DM F R  FRVRG+VIDI+PAESD EA+R+E+FDDE+E +S FDPLTG +  R L RFT 
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVI-RKLPRFTF 242

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YPK+HYVTPRE +L+AIE IK ELQ R +YL  NNKL+E QR+ QRT+FD+EM+ ELG+C
Sbjct: 243 YPKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYC 302

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
           +GIENYSRYLSGR  G PPPTL+DYLP D LL+IDESHV+VPQ+GAM+KGDRSRKETLVE
Sbjct: 303 NGIENYSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVE 362

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           +GFRLPSALDNRP++FDE+E+++PQTIFVSATP  YE  +  G V EQVVRPTGL+DP +
Sbjct: 363 YGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYE-AEHAGRVVEQVVRPTGLVDPQV 421

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
           EVRP  TQVDDLLSE   R A +ER+LVTTLTKRMAEDLT+YL +HGV+VRYLHSDIDTV
Sbjct: 422 EVRPALTQVDDLLSEISKRVALEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTV 481

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+GRAA
Sbjct: 482 ERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604
           RN+NG+AILYAD IT SM +AI ETERRR+KQ+A+N   GITP+ + + V DIME   + 
Sbjct: 542 RNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATVP 601

Query: 605 KSRKQKNSKVVPLAKVAEESAAY--QVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKR 662
            SR +K      +AK AEESA Y  ++ +P ++ K I +LE  MYQ A++LEFE AAQ R
Sbjct: 602 GSRSKKRK---GMAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQLR 658

Query: 663 DEIHQLRQQFI 673
           DEI +LR++ +
Sbjct: 659 DEIGKLRERLL 669