Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score = 55.8 bits (133), Expect = 6e-12
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 13/175 (7%)

Query: 442 IRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVL 501
           I A   E++LV T TK  A  L EYL +HG+    +H +     R + + D + G   +L
Sbjct: 244 ITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRIL 303

Query: 502 VGINLLREGLD---MPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSI 558
           V  ++   GLD   +P V    + + D++   R  R+     GRA R  +G+AI     +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRT-----GRAGR--SGEAI---SLV 353

Query: 559 TKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSK 613
                K +   ER  ++++A  +  G     ++    ++ E  D+   R  +  +
Sbjct: 354 APDEEKLLKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPR 408



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 4   AFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATA------- 56
           A E     QP   Q  AI  +L+G +  +A QT  G TG      L  +           
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74

Query: 57  ----QRPTIILAPNKTLAAQLYGEMKAF 80
               Q   ++L P + LAAQ++   K +
Sbjct: 75  HGPRQPRVLVLTPTRELAAQVHESFKVY 102