Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

 Score = 70.9 bits (172), Expect = 3e-16
 Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 23/207 (11%)

Query: 28  LEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVE 87
           L A    Q    + G+  +  +A   + A+R T++L  +   A +L  E+  F P+  V 
Sbjct: 9   LPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVL 68

Query: 88  YFVSY----YDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVS 143
           +F  +    YD + P                 +  I   R+++   L E    V+V  ++
Sbjct: 69  HFPDWETLPYDLFSP-----------------HQDIISQRIASLYRLPELSHGVLVVPIT 111

Query: 144 -AIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDI 202
            A++ L      L   L L  G  ++   M  RL    Y   D  +E G+F VRG +ID+
Sbjct: 112 TALHRLAPTQFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDL 171

Query: 203 FPAESDQEAVRVEMFDDEIECISLFDP 229
           FP  S +   R+++FDDEIE +  FDP
Sbjct: 172 FPMGS-KLPYRIDLFDDEIETLRTFDP 197



 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 33/130 (25%)

Query: 471 GVKVRYLHSDIDTVER-----VEIIRDLRLGV---------------------FDVLVGI 504
           G +V YLH+D+ T+E+      E++ + R+G+                     F+VL+  
Sbjct: 811 GGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIAS 870

Query: 505 NLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRK 564
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +T   ++
Sbjct: 871 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPPRQQ 923

Query: 565 AIDETERRRE 574
              + E+R E
Sbjct: 924 ITPDAEKRLE 933