Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens FW300-N2E3

 Score = 56.6 bits (135), Expect = 3e-12
 Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 22/235 (9%)

Query: 389 QTIFVSATPSEYELTKSGGEVAE-----QVVRPTGLLDPIIE--VRPVATQVDDLLSEAR 441
           Q +  SAT S+ ++T   G++       +V  P   ++ I +   R  A+    LL+   
Sbjct: 186 QNLLFSATFSK-DITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLLAHL- 243

Query: 442 IRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVL 501
           I A   E++LV T TK  A  L EYL +HG+    +H +     R + + D + G   +L
Sbjct: 244 ITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRIL 303

Query: 502 VGINLLREGLD---MPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSI 558
           V  ++   GLD   +P V    + + D++   R  R+     GRA R  +G+AI     +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRT-----GRAGR--SGEAI---SLV 353

Query: 559 TKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSK 613
                K +   ER  ++++A  +  G     ++    ++ E  D+   R  +  +
Sbjct: 354 APDEEKLLKSIERMTKQKIADGDLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPR 408



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 3   KAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATA------ 56
           +A E     QP   Q  AI  +L+G +  +A QT  G TG      L  +          
Sbjct: 14  RAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQ 73

Query: 57  -----QRPTIILAPNKTLAAQLYGEMKAF 80
                Q   ++L P + LAAQ++   K +
Sbjct: 74  RHGPRQPRVLVLTPTRELAAQVHESFKVY 102