Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 74.7 bits (182), Expect = 2e-17
 Identities = 84/322 (26%), Positives = 128/322 (39%), Gaps = 62/322 (19%)

Query: 25  LEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNN 84
           L  L A    Q    + G+  +  +A   + A+R T++L  +   A +L  E+  F P  
Sbjct: 6   LPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGL 65

Query: 85  AVEYFVSY----YDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVA 140
            V +F  +    YD + P                 +  I   R+SA   L E    V+V 
Sbjct: 66  PVLHFPDWETLPYDIFSP-----------------HQDIVSQRISALYQLPELSHGVLVV 108

Query: 141 SVS-AIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEV 199
            ++ A++ L      L   L L  G  ++   M  RL    Y   D  +E G+F VRG +
Sbjct: 109 PITTALHRLAPKRFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGAL 168

Query: 200 IDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILE 259
           ID+FP  S     R+++FDDEIE +  FDP                         +R ++
Sbjct: 169 IDLFPMGSPL-PYRIDLFDDEIETLRTFDP-----------------------ENQRSID 204

Query: 260 AIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMN-------ELGFC-SGIENYS 311
            +E I+  L   R++ L   + +   R   R +FD++            G   +GIE Y 
Sbjct: 205 KVESIR--LLPAREFPL-KKEAVTGFRARFRERFDVDFRRCPIYQDLSTGITPAGIEYYL 261

Query: 312 RYLSGRAEGEPPPTLFDYLPHD 333
                    E   TLFDYLP D
Sbjct: 262 PLFY-----EETATLFDYLPED 278



 Score = 38.5 bits (88), Expect = 2e-06
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 33/130 (25%)

Query: 471 GVKVRYLHSDIDTVERVE-----IIRDLRLGV---------------------FDVLVGI 504
           G +V YLH+D+ T+E+       ++ + R+ +                     F+VLV  
Sbjct: 808 GGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQMRERDLEQVMSDFYHKRFNVLVAS 867

Query: 505 NLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRK 564
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +T + + 
Sbjct: 868 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPTRKA 920

Query: 565 AIDETERRRE 574
             D+ ++R E
Sbjct: 921 MTDDAQKRLE 930