Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

 Score =  957 bits (2475), Expect = 0.0
 Identities = 484/675 (71%), Positives = 573/675 (84%), Gaps = 8/675 (1%)

Query: 1   MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPT 60
           MSK FELV+ ++PAGDQP AI+Q++EG+EAGL+HQTLLGVTGSGKTF++ANVIA  QRPT
Sbjct: 1   MSK-FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPT 59

Query: 61  IILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE 120
           ++LAPNKTLAAQLYGE KAFFPNNAVEYFVSYYDYYQPEAYVP++DTFIEKDAS+N HIE
Sbjct: 60  LVLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIE 119

Query: 121 QMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQ 180
           QMRLSATKALLER DA+IV +VS IYGLGDP SYLKM+LH+ RGD ++QR++LRRL  LQ
Sbjct: 120 QMRLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQ 179

Query: 181 YSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLA 240
           Y+RNDM F R  FRVRG+VIDIFPAESD EAVR+E+FDDE+E +S FDPLTG +  R L 
Sbjct: 180 YTRNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVI-RKLP 238

Query: 241 RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNE 300
           RFT YPK+HYVTPRE +L+AIE+IK EL+ R  YL   NKL+E QR+ QRT+FD+EM+ E
Sbjct: 239 RFTFYPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIME 298

Query: 301 LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKE 360
           LG+C+GIENYSRYLSGR  GEPPPTLFDYLP D LL+IDESHV+VPQ+GAM+KGDRSRKE
Sbjct: 299 LGYCNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKE 358

Query: 361 TLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLL 420
           TLVE+GFRLPSALDNRP++FDE+EA+ PQTIFVSATP  YE  +  G V EQVVRPTGL+
Sbjct: 359 TLVEYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYE-AEHAGRVVEQVVRPTGLV 417

Query: 421 DPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD 480
           DP IEVRP  TQVDDLLSE R     +ER+LVTTLTKRMAEDLT+YL +H V+VRYLHSD
Sbjct: 418 DPQIEVRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSD 477

Query: 481 IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTM 540
           IDTVERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+
Sbjct: 478 IDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 537

Query: 541 GRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMEL 600
           GRAARN+NG+AILYAD++T SM++A+DETERRR KQ+A+NE  GI P+ + + V+DI+E 
Sbjct: 538 GRAARNLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVRDILEG 597

Query: 601 GDIAKSRKQKNSKVVPLAKVAEESAAY--QVLTPQQLEKEISKLEAAMYQHAQNLEFELA 658
             +  SR +K       AK AEESA Y  ++ +P ++ K I +LE  M   A++LEFE A
Sbjct: 598 ATVPGSRSKKRRGE---AKAAEESARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAA 654

Query: 659 AQKRDEIHQLRQQFI 673
           A+ RDEIH+LR++ +
Sbjct: 655 AEARDEIHKLRERLL 669