Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1150 a.a., transcription-repair coupling factor from Pseudomonas syringae pv. syringae B728a

 Score = 76.3 bits (186), Expect = 8e-18
 Identities = 82/322 (25%), Positives = 132/322 (40%), Gaps = 62/322 (19%)

Query: 25  LEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNN 84
           L  L A    Q    + G+  +  +A   + A+R T++L  +   A +L  E+K F P  
Sbjct: 6   LPHLSAAAGKQHWGNLPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTL 65

Query: 85  AVEYFVSY----YDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVA 140
            V +F  +    YD + P                 +  I   R+++   L E +  V+V 
Sbjct: 66  PVLHFPDWETLPYDLFSP-----------------HQDIISQRIASLYRLPELEHGVLVV 108

Query: 141 SVS-AIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEV 199
            ++ A++ L      L   L L  G  ++   M  RL    Y   D  +E G+F VRG +
Sbjct: 109 PITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGAL 168

Query: 200 IDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILE 259
           ID+FP  S +   R+++FDDEIE +  FDP T                       +R ++
Sbjct: 169 IDLFPMGS-KLPFRIDLFDDEIETLRTFDPDT-----------------------QRSID 204

Query: 260 AIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGF--------CSGIENYS 311
            +E ++  L   R++ L   + +   +   R +FD++      F         +GIE Y 
Sbjct: 205 KVESVR--LLPAREFPLQKEE-VTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYI 261

Query: 312 RYLSGRAEGEPPPTLFDYLPHD 333
                    E   TLFDYLP D
Sbjct: 262 PLFF-----EETSTLFDYLPQD 278



 Score = 42.0 bits (97), Expect = 2e-07
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 33/130 (25%)

Query: 471 GVKVRYLHSDIDTVER-----VEIIRDLRLGV---------------------FDVLVGI 504
           G +V YLH+D+ T+E+      E++ + R+G+                     F+VL+  
Sbjct: 812 GGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 505 NLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRK 564
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +T   ++
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPPRKQ 924

Query: 565 AIDETERRRE 574
              + E+R E
Sbjct: 925 ITHDAEKRLE 934