Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1153 a.a., transcription-repair coupling factor from Synechococcus elongatus PCC 7942

 Score = 57.4 bits (137), Expect = 4e-12
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 101 YVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAV-IVASVSAIYGLGDPDSYLKMML 159
           + PT+++   +     + +   +L     LLE+   V IVA+  ++     P   L+   
Sbjct: 81  FYPTSESSPYEAFDPESELVWGQLQVLADLLEQSQPVAIVATERSLQPHLPPVEALRPFC 140

Query: 160 H-LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFD 218
             L+RG  +N  ++  R A+  Y R D     GQ+  RG++ID+FP  S +  VR+E+F 
Sbjct: 141 QTLQRGQEVNLGELADRFAQFGYERVDTVETEGQWSRRGDIIDLFPV-SAELPVRLELFG 199

Query: 219 DEIECISLFDPLT 231
           DE+E +  FDP T
Sbjct: 200 DELERLREFDPAT 212



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 499 DVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAAR 545
           DV++   ++  GLD+P V  + I DA + G       L Q  GR  R
Sbjct: 867 DVMICTTIIESGLDIPRVNTILIEDAQRFGL----SQLYQLRGRVGR 909