Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., excinuclease ABC subunit B from Synechococcus elongatus PCC 7942

 Score =  750 bits (1937), Expect = 0.0
 Identities = 382/670 (57%), Positives = 504/670 (75%), Gaps = 11/670 (1%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F+L + YQP GDQPTAI QL+E ++AG  +QTLLG TG+GKTFT+ANVIA   RP ++LA
Sbjct: 4   FQLQARYQPMGDQPTAIAQLVEQVQAGAPYQTLLGATGTGKTFTIANVIAQVGRPALVLA 63

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
            NKTLAAQL  E++ FFPNNAVEYF+SYYDYYQPEAY+P TDT+I K AS+N  I+ +R 
Sbjct: 64  HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDMLRH 123

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           SAT+ L ER+D ++VAS+S IYGLG P  YLK  + L  G  IN R++LR+L ++QYSRN
Sbjct: 124 SATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPLEVGAEINMREVLRQLVDVQYSRN 183

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           D+   RG+FRV+G+V++I PA  D+  +RVE F DEI+ I   DP+TG I  + L R  I
Sbjct: 184 DLESGRGRFRVKGDVLEIGPAYEDR-IIRVEFFGDEIDAIRYIDPVTGEIL-QSLDRLNI 241

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YP  H+VTP ER+  AI +IK EL  +   L    KL+E QR+ QRT++D+EM+ E+G+C
Sbjct: 242 YPARHFVTPEERLEIAIAEIKEELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVGYC 301

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
           +G+ENY+R+L+GR  G PP  L DY P D LL++DESHVTVPQ+  M+ GD+SRK+ LV+
Sbjct: 302 NGVENYARHLAGREPGSPPECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVLVD 361

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
            GFRLPSA DNRPLK +EF     Q IFVSATP ++E+ +S  ++ EQV+RPTG++DP +
Sbjct: 362 HGFRLPSAADNRPLKSEEFWEKVRQCIFVSATPGDWEIERSEEQIVEQVIRPTGVVDPEV 421

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
            VRP   QVDDLL+E + R    ER L+TTLTKRMAEDLT+YL + GVKVRYLHS+I+++
Sbjct: 422 FVRPTEGQVDDLLAEIQQRVRRQERALITTLTKRMAEDLTDYLSDRGVKVRYLHSEINSI 481

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ER+EI++DLR G FDVL+G+NLLREGLD+PEV+LVAILDADKEGFLR+ERSLIQT+GRAA
Sbjct: 482 ERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAA 541

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQP-LKRSVKDIMELGDI 603
           R++NG+AILYAD +T+SM KAI ETERRR  QL YN++  ITPQP +KRS   I+   ++
Sbjct: 542 RHINGQAILYADRMTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSFLEV 601

Query: 604 AKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRD 663
           ++ R  K    V +++  +       L+ +++   I++LEA M + A+NLEFE AAQ RD
Sbjct: 602 SR-RLNKQELEVAVSQADD-------LSLEEIPNLITQLEAQMKEAAKNLEFEEAAQYRD 653

Query: 664 EIHQLRQQFI 673
            I +LR++ +
Sbjct: 654 RIKKLRERLV 663