Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 985 a.a., excinuclease ABC subunit B from Sinorhizobium meliloti 1021

 Score =  777 bits (2007), Expect = 0.0
 Identities = 399/671 (59%), Positives = 495/671 (73%), Gaps = 6/671 (0%)

Query: 4   AFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIIL 63
           A  + SDY+PAGDQPTAI  L++GL +G  +Q LLGVTGSGKTFT+A VI   QRP +IL
Sbjct: 157 AIRMQSDYEPAGDQPTAIADLVDGLTSGERNQVLLGVTGSGKTFTMAKVIEATQRPAVIL 216

Query: 64  APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123
           APNKTLAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N  I++MR
Sbjct: 217 APNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMR 276

Query: 124 LSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
            SAT++LLER D +IVASVS IYG+G  ++Y  M   +  GD ++QR +L  L   QY R
Sbjct: 277 HSATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKR 336

Query: 184 NDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFT 243
            DM F+RG FRVRG+ I+IFPA  +  A R+ MF DEI+ I+ FDPLTG  T  DL    
Sbjct: 337 RDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTG-DLKSVK 395

Query: 244 IYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGF 303
           IY  +HYVTPR  +  AI+ IK E+  R   L    +LLE QR+ QRT++DIEM+   G 
Sbjct: 396 IYANSHYVTPRPTLNAAIKAIKEEMSQRLAELERAGRLLEAQRLEQRTRYDIEMLEATGS 455

Query: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLV 363
           C GIENYSRYL+GR  GEPPPTLF+Y+P + L+ IDESHVT+PQIG M++GD  RK TL 
Sbjct: 456 CQGIENYSRYLTGRRPGEPPPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFRRKATLA 515

Query: 364 EFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPI 423
           E+GFRLPS +DNRPL+F+E++A+ P TI VSATP  +E+ ++GG  AEQV+RPTGL+DP 
Sbjct: 516 EYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQAGGVFAEQVIRPTGLIDPP 575

Query: 424 IEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDT 483
           +EVR   TQVDD+L E R  AA   R LVT LTKRMAEDLTEYLHE GV+VRY+HSDIDT
Sbjct: 576 VEVRSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDT 635

Query: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRA 543
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE   VAILDADKEGFLRSE SLIQT+GRA
Sbjct: 636 LERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRA 695

Query: 544 ARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDI 603
           ARNV+GK ILYAD+IT SM++A++ET RRREKQ+AYN + GITP+ +K  + DI+   D 
Sbjct: 696 ARNVDGKVILYADTITGSMQRAMEETSRRREKQMAYNAEHGITPESVKAKISDIL---DS 752

Query: 604 AKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRD 663
              R    + +  +A        +  L    L+  ++ LE  M   A +L+FE AA+ RD
Sbjct: 753 VYERDHVRADISGVAGKGFADGGH--LVGNNLQAHLNALEKQMRDAAADLDFEKAARLRD 810

Query: 664 EIHQLRQQFIA 674
           EI +L+   +A
Sbjct: 811 EIKRLKAAELA 821