Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score =  981 bits (2536), Expect = 0.0
 Identities = 501/672 (74%), Positives = 576/672 (85%), Gaps = 6/672 (0%)

Query: 3   KAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTII 62
           + F+L S Y PAGDQPTAI +L++GLE+GLA QTLLGVTGSGKTFT+ANVIAT  RPTII
Sbjct: 4   QVFQLSSHYSPAGDQPTAIAKLIDGLESGLACQTLLGVTGSGKTFTVANVIATLGRPTII 63

Query: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122
           +APNKTLAAQLYGEMK FFPNNAVEYFVSYYDYYQPEAYVP ++TFIEKDASVNAHIEQM
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 123 RLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYS 182
           RLSATKALLER+D +IVASVSAIYGLGDPDSY+KM+LHLR+GD + QRD+LRRL+ELQYS
Sbjct: 124 RLSATKALLERRDVIIVASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILRRLSELQYS 183

Query: 183 RNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARF 242
           RND+  +RG FRVRGEVIDIFPA+S+++A+RVE+FDDEIE IS FDPLTG +T R LAR 
Sbjct: 184 RNDIDLQRGTFRVRGEVIDIFPADSERDAIRVELFDDEIERISEFDPLTGQVTKR-LARA 242

Query: 243 TIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELG 302
           T+YPKTHYVTPRE+ILEAI+QIK EL+VR+Q  LDN+KL+E QRI++R Q+D+EMM ELG
Sbjct: 243 TVYPKTHYVTPREKILEAIDQIKDELRVRKQQFLDNHKLIEAQRITERVQYDVEMMTELG 302

Query: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETL 362
           +CSGIENYSRYLSGRAEGE PPTL DYLP DGL+IIDESH TVPQIGAM+KGDRSRK TL
Sbjct: 303 YCSGIENYSRYLSGRAEGEGPPTLLDYLPADGLMIIDESHNTVPQIGAMYKGDRSRKTTL 362

Query: 363 VEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDP 422
           VE+GFRLPSALDNRPLKF+EFE+L PQTIFVSATP +YEL KSG ++AEQVVRPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPGKYELEKSGDDIAEQVVRPTGLIDP 422

Query: 423 IIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDID 482
            +EVRPVA QVDDLLSE   R A +ER+LVTTLTKRMAEDLT+YL EHGVKVRYLHSDID
Sbjct: 423 ELEVRPVAIQVDDLLSEVAKRVAVNERVLVTTLTKRMAEDLTDYLDEHGVKVRYLHSDID 482

Query: 483 TVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGR 542
           TVER+EIIRDLRLGVFDVLVGINLLREGLDMPEV+LV ILDADKEGFLRSERSLIQT+GR
Sbjct: 483 TVERMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGR 542

Query: 543 AARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGD 602
           AARNVNGK ILYAD IT SM +A+ ETERRR KQ+ +NE+ GI P+ + + + D+M++G+
Sbjct: 543 AARNVNGKVILYADRITDSMARAMAETERRRTKQMQFNEEHGIIPRGVVKKITDVMDVGE 602

Query: 603 -IAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661
             A SR      V    +  +         P Q+   I  LE  M+QHA++LEFE AA  
Sbjct: 603 RSAPSR----GAVKASGRSRDVGKPSMRQDPHQIAVTIDALEKQMHQHARDLEFEQAAAL 658

Query: 662 RDEIHQLRQQFI 673
           RDEIH LRQQ +
Sbjct: 659 RDEIHGLRQQLL 670