Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 75.5 bits (184), Expect = 1e-17
 Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 35/293 (11%)

Query: 42  GSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAY 101
           G  +  TLA +  +    T+I+  +   A  L  E+        ++  +           
Sbjct: 26  GVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPRGIDICL----------- 74

Query: 102 VPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKM-MLH 160
            P  +T      S +  +   RL     L   K  +++  ++ +     P ++L   +L 
Sbjct: 75  FPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLI 134

Query: 161 LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDE 220
           L++GD    + M + L +  Y   +  +E G+F +RG ++DIFP+ +  E +R+E+FDDE
Sbjct: 135 LKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGA-SEPLRIELFDDE 193

Query: 221 IECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNK 280
           +E I  FDP T   +S ++    + P   + T  + I E   Q     + RR +   NN 
Sbjct: 194 VESIRHFDPET-QRSSGEVDSIRMLPAREFPTDSQAI-EGFRQ-----RYRRTFETVNNA 246

Query: 281 LLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHD 333
                ++  R              +GIENY          +   TLFDYLP +
Sbjct: 247 AESVYQLVSRNLMP----------AGIENYLPLFF-----DDTATLFDYLPEE 284



 Score = 32.0 bits (71), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 457 KRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEV 516
           ++ A+D+ E L E   +V   H  +   E   ++ D     F+VLV   ++  G+D+P  
Sbjct: 827 EKAAQDIRELLPE--ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSA 884

Query: 517 ALVAILDADKEGFLRSERSLIQTMGRAARN 546
             + I  AD  G  +    L Q  GR  R+
Sbjct: 885 NTILIDRADHFGLAQ----LHQLRGRVGRS 910