Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score = 56.2 bits (134), Expect = 9e-12
 Identities = 123/534 (23%), Positives = 206/534 (38%), Gaps = 88/534 (16%)

Query: 21  IKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAF 80
           +K LLE L  G   +   G+        L  + A    P ++      +      E  AF
Sbjct: 1   MKNLLESLAVGRRIEAA-GLPEGFDALVLGELAARPGVPAVLHVARDDVRLARLAETIAF 59

Query: 81  FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDA---- 136
           F + AVE               P  D       S N  I   RL     L E        
Sbjct: 60  F-HPAVEILE-----------FPAWDCVPYDRVSPNVEIVARRLETLSRLSEEPTRQPGG 107

Query: 137 -VIVASVSAIYGLGDPDSYLKM-MLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFR 194
            +++ + SAI     P   L+  +   R G  ++   +L  LA   Y R++   E G++ 
Sbjct: 108 RLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYA 167

Query: 195 VRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPR 254
           VRG ++DIFP  +  E +R+++F DE++ +  FDP++   T +  A   + P +  V  +
Sbjct: 168 VRGGIVDIFPPGA-PEPLRLDLFGDELDSLRSFDPVSQRTTGQRDA-LILRPMSEVVLDK 225

Query: 255 ERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYL 314
               E+I + +S    R  +   +      + IS    F            G+E++    
Sbjct: 226 ----ESISRFRS--GYRELFGTPSAADALYEAISAGLPF-----------MGMEHWLPLF 268

Query: 315 SGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEF--GFRLPSA 372
                 E   TLF Y+P DG + +D         GA+    RSR++ + E+    RL  +
Sbjct: 269 H-----EGMDTLFAYVP-DGPVTLDPG-----LDGAL----RSRQDQIFEYFEARRLMES 313

Query: 373 LDNRPLKFDE------FEALAPQTIFV-------------SATPSEY---ELTKSGGEVA 410
           + +     ++      + AL P  +F+              A  S Y   ++    G V 
Sbjct: 314 VGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVG 373

Query: 411 EQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEH 470
           + + RP G     I  R      D L   A+   A  +R+++T  T    E +T  L EH
Sbjct: 374 DFLGRP-GHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREH 432

Query: 471 GVKVRYLHSDIDTVER-VEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILD 523
           G+      S I T E   E +   +      +V   +L  G + P++A+++  D
Sbjct: 433 GL------SPIVTAETWAEALERAKKA---TVVLTLILDRGFETPDLAVISEAD 477



 Score = 34.3 bits (77), Expect = 3e-05
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 488 EIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAAR-N 546
           E++     G +DVLV  N++  GLD+P    + I  AD  G  +    L Q  GR  R  
Sbjct: 877 EVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHRADMFGLAQ----LYQLRGRVGRAR 932

Query: 547 VNGKAILY---ADSITKSMRKAID 567
             G A L      +++K+  K +D
Sbjct: 933 ARGYAYLTLPPGRTVSKTAAKRLD 956