Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  776 bits (2005), Expect = 0.0
 Identities = 395/664 (59%), Positives = 495/664 (74%), Gaps = 12/664 (1%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F L SDYQPAGDQP AI +LL GL A    Q LLGVTGSGKTFT+A VIA   RPT+ILA
Sbjct: 38  FRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLILA 97

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEKD+S+N  I++MR 
Sbjct: 98  PNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 157

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           +AT+ALLER+D +IVASVS IYG+G  +SY +M++ ++ G  + + D+L+ L ELQ++RN
Sbjct: 158 AATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFTRN 217

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           D+AF RG FRVRG+ ++IFPA  +  A RV ++ DEIE +  FDPLTG IT+  L   T+
Sbjct: 218 DIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITA-SLDEVTV 276

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YP +H+VTPR  + +A+  IK+EL+       D  K+LE QR+ QRT FD+EM+   G C
Sbjct: 277 YPASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGHC 336

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
             IENYSR+L+GR  G+PPPTLF+YLP D LL +DESHV VPQIG MF+GD +RK  L E
Sbjct: 337 KSIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLAE 396

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           FGFRLPS +DNRPLKF+E++ + P +IFVSATP  +EL ++GG VAEQV+RPTGL+DP+ 
Sbjct: 397 FGFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPVC 456

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
            +RPV  QVDDLL E +  AA  ER+LVTTLTKRM+EDLTEYL E GV+VRY+HSDI+T+
Sbjct: 457 IIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIETL 516

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE ALVAILDADKEGFLRS  SLIQT+GRAA
Sbjct: 517 ERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAA 576

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604
           RNV G+ ILYAD +T S+  AI+ET RRR++Q  YN   GITP+ ++  + D++      
Sbjct: 577 RNVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVL------ 630

Query: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664
            S  +K+   V      +       L  + L + ++ L+  M   A +LEFE A + RDE
Sbjct: 631 SSVYEKDYVTVTTGVSGDNQ-----LVGKSLREHLADLDKRMRAAAADLEFEEAGRLRDE 685

Query: 665 IHQL 668
           I +L
Sbjct: 686 IRRL 689