Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 732 a.a., uvrABC system protein B from Phaeobacter inhibens DSM 17395

 Score =  765 bits (1975), Expect = 0.0
 Identities = 388/677 (57%), Positives = 498/677 (73%), Gaps = 18/677 (2%)

Query: 3   KAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTII 62
           + F + +++ PAGDQPTAIK+L EG+  G  +Q LLG TG+GKTFT+A VI   QRP II
Sbjct: 28  REFVMHTEFDPAGDQPTAIKELSEGVLEGERNQVLLGATGTGKTFTMAKVIEETQRPAII 87

Query: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122
           LAPNKTLAAQLYGE K FFP N+VEYFVS+YDYYQPEAYV  +DT+IEK++ +N  I++M
Sbjct: 88  LAPNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRM 147

Query: 123 RLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYS 182
           R SAT++LLER D +I+ASVS IYG+G  ++Y  M   L+ GD  +QR ++  L   QY 
Sbjct: 148 RHSATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGDEYDQRQVMADLVAQQYK 207

Query: 183 RNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARF 242
           RND AF+RG FRVRG+ ++IFPA  +  A R+  F +E+E I+ FDPLTG  T     + 
Sbjct: 208 RNDQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELEGITEFDPLTGEKTGT-FDQI 266

Query: 243 TIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELG 302
            +Y  +HYVTP+  + +A+  IK EL++R   L+   KLLE QR+ QRT FDIEM+   G
Sbjct: 267 RVYANSHYVTPKPTLKQAVISIKEELKMRLDQLVGEGKLLEAQRLEQRTNFDIEMLEATG 326

Query: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETL 362
            C+GIENYSRYL+GRA GEPPPTLF+++P + ++  DESHV+VPQIG M+KGD  RK TL
Sbjct: 327 HCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKFTL 386

Query: 363 VEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDP 422
            E GFRLPS +DNRPLKF+E++A+ PQ++FVSATPS++EL +S G  AEQV+RPTGLLDP
Sbjct: 387 AEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWELEQSSGVFAEQVIRPTGLLDP 446

Query: 423 IIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDID 482
            +E+RPV  QVDDLL E R   A+  R LVTTLTKRMAEDLTEY+HE G+KVRY+HSDID
Sbjct: 447 QVEIRPVDMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDID 506

Query: 483 TVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGR 542
           T+ER+EI+RDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRSE SLIQT+GR
Sbjct: 507 TLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGR 566

Query: 543 AARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME--- 599
           AARN  G+ I+YAD IT SM +A+ ET RRR+KQ+AYNE+ GITP  +K++V+D++    
Sbjct: 567 AARNAEGRVIMYADRITGSMERALGETNRRRDKQIAYNEEHGITPATVKKNVEDVLAGLY 626

Query: 600 LGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
            GD+  +R                +   + +    LE  ++ L   M + A+NLEFE AA
Sbjct: 627 AGDVDMNR--------------VTATIDKPMHGANLEAHLAGLREQMRKAAENLEFEEAA 672

Query: 660 QKRDEIHQLRQQFIANS 676
           + RDE+ +L    +A S
Sbjct: 673 RLRDEVKRLEAVDLAVS 689