Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  999 bits (2583), Expect = 0.0
 Identities = 510/671 (76%), Positives = 580/671 (86%), Gaps = 6/671 (0%)

Query: 4   AFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIIL 63
           AF+LVS Y PAGDQP AIKQL++GL+AGLA+QTLLGVTGSGKTFT+ANVI   QRPTII+
Sbjct: 5   AFDLVSQYAPAGDQPGAIKQLVDGLDAGLANQTLLGVTGSGKTFTIANVIKQMQRPTIIM 64

Query: 64  APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123
           APNKTLAAQLYGEMK FFPNNAVEYFVSYYDYYQPEAYVP+T+TFIEKDASVNAHIEQMR
Sbjct: 65  APNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMR 124

Query: 124 LSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
           LSATKALLER+D V++ASVSAIYGLGDP+SY+KM+LHLR+GD + QR++L+RL+ELQY+R
Sbjct: 125 LSATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLSELQYTR 184

Query: 184 NDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFT 243
           ND+  +RG FRVRGEVIDIFPAESD++A+RVE+FDDEI+ +SLFDPLTG I  R +AR T
Sbjct: 185 NDIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQR-IARTT 243

Query: 244 IYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGF 303
           +YPKTHYVTPRE+IL A E IK EL+ R+QYLLDNNKL+E QRIS+R Q+DIEMM ELG+
Sbjct: 244 VYPKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMMTELGY 303

Query: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLV 363
           CSGIENYSRYLSGR  GE PPTL DYLP DGLLI+DESHVTVPQIGAM+KGDRSRK  LV
Sbjct: 304 CSGIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 364 EFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPI 423
           E+GFRLPSALDNRPLKF+EFE+L PQTIFVSATP++YEL KS GE+AEQVVRPTGLLDP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTGLLDPE 423

Query: 424 IEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDT 483
           IEVRPVA QVDDLLSEA  R A +ER+LVTTLTKRMAEDLTEYL EHGVKVRYLHSDIDT
Sbjct: 424 IEVRPVAIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRA 543
           VERVEIIRDLRLGVFDVLVGINLLREGLDMPEV+LV ILDADKEGFLRSERSLIQT+GRA
Sbjct: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 544 ARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDI 603
           ARNVNGK ILYAD++TKSM KAI ETERRREKQ  +N   GITP+ + + + D+M+LGD 
Sbjct: 544 ARNVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIADVMDLGDY 603

Query: 604 AKSRKQKNSKVVP-LAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKR 662
                +  +KV+P   KVAE    Y       L  +I +LE  M+QHA++LEFE AA  R
Sbjct: 604 ----NEHTAKVLPKYQKVAESRTTYAKQDASSLSHQIDELEKRMHQHARDLEFEQAAALR 659

Query: 663 DEIHQLRQQFI 673
           DE+  LR+  I
Sbjct: 660 DEVLALREALI 670