Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 78.6 bits (192), Expect = 2e-18
 Identities = 71/304 (23%), Positives = 130/304 (42%), Gaps = 35/304 (11%)

Query: 35  QTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYD 94
           QTL  +TG+ +  +LA +       T+++ P+   A +L  E+       ++        
Sbjct: 19  QTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPKSI-------- 70

Query: 95  YYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSY 154
              P    P  +T      S +  +   RL     +     ++++  +S +     P S+
Sbjct: 71  ---PVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPPQSF 127

Query: 155 LK-MMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVR 213
           L   +L L +GD      +  +L    Y   +  +E G+F VRG +ID+FP  + Q   R
Sbjct: 128 LTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGA-QSPYR 186

Query: 214 VEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQ 273
           +E+FDDE+E I  FDP T   +S ++    + P   + T  +  +E   Q     + RRQ
Sbjct: 187 IELFDDEVESIREFDPET-QRSSGEIESIRLLPAKEFPT-NDAAIEGFRQ-----RYRRQ 239

Query: 274 YLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHD 333
           +          + + +  +   +M++     +GIE+Y          +   +LFDYLP +
Sbjct: 240 F----------EVVVKEPESIYQMVSRKVMPAGIESYLPLFF-----DETASLFDYLPGE 284

Query: 334 GLLI 337
             L+
Sbjct: 285 CQLV 288



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 452 VTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGL 511
           V T+ KR A ++   L E   +V   H  +   +  +++ D     ++VLV   ++  G+
Sbjct: 827 VETIEKR-AREIEALLPE--ARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGI 883

Query: 512 DMPEVALVAILDADKEGFLRSERSLIQTMGRAARN 546
           D+P    + I  AD  G  +    L Q  GR  R+
Sbjct: 884 DVPSANTIIIERADNFGLAQ----LHQLRGRVGRS 914