Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., excinuclease ABC, B subunit from Dechlorosoma suillum PS

 Score =  882 bits (2279), Expect = 0.0
 Identities = 447/667 (67%), Positives = 539/667 (80%), Gaps = 9/667 (1%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           + L   + PAGDQP AI+ L+EGLE GL++QTLLGVTGSGKT+T+ANVIA   RP +ILA
Sbjct: 21  YRLHQPFPPAGDQPEAIRLLVEGLEDGLSYQTLLGVTGSGKTYTMANVIARTGRPALILA 80

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTLAAQLY E + F P NAVEYFVSYYDYYQPEAYVP+ D FIEKD+S+N HIEQMRL
Sbjct: 81  PNKTLAAQLYAEFREFLPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 140

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           SATK+LLER+D VIVA+VS IYG+GD D Y  M+LHLR+GD   QRD+++RL+E+QY RN
Sbjct: 141 SATKSLLERRDVVIVATVSCIYGIGDKDDYHNMILHLRQGDKAGQRDIIKRLSEMQYERN 200

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           ++ F+RG FRVRG+VIDIFPAE  + A+RV +FDDEIE + LFDPLTG +  + L RFTI
Sbjct: 201 EVDFQRGTFRVRGDVIDIFPAEHAEHAIRVCLFDDEIETLQLFDPLTGHLLHK-LPRFTI 259

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YP +HYVTPR  +L A+E IK EL+ R ++     +L+E QRI QRT+FD+EM+NELGFC
Sbjct: 260 YPSSHYVTPRATVLRAVEGIKEELRKRLEFFHKEQRLVEAQRIEQRTRFDLEMLNELGFC 319

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
            GIENYSR+LSGR  GE PPTL DYLP D L+ IDESHV + Q+GAM+KGDRSRKE LV+
Sbjct: 320 KGIENYSRHLSGRKPGEAPPTLLDYLPPDALMFIDESHVAIGQVGAMYKGDRSRKENLVD 379

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           +GFRLPSALDNRPLKF+EFE L  QTIFVSATPS+YE  +  G+V EQVVRPTGL+DP++
Sbjct: 380 YGFRLPSALDNRPLKFEEFERLMRQTIFVSATPSDYE-KQHQGQVVEQVVRPTGLIDPVV 438

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
            VRP  TQVDDLLSE R R A  ER+LVTTLTKRMAEDLT+YL E+G+KVRY+HSDIDTV
Sbjct: 439 LVRPAMTQVDDLLSEIRKRIAVSERVLVTTLTKRMAEDLTDYLRENGIKVRYVHSDIDTV 498

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ERVEIIRDLRLG FDVLVGINLLREGLD+PEV+LVAILDADKEGFLRSERSLIQT+GRAA
Sbjct: 499 ERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 558

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604
           R++NG AILYAD +T SMR+A+DETERRR KQ+A+NE  GITP+ + + +KDI++ G   
Sbjct: 559 RHLNGTAILYADRVTDSMRRAMDETERRRAKQMAHNEAHGITPKGVSKRIKDIID-GVYD 617

Query: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664
               QK        K A++ A Y+ ++ + L KEI +LE  M + A+NLEFE AA  RDE
Sbjct: 618 PDAAQKE------LKAAQQQAVYETMSEKNLAKEIKRLEKQMLESAKNLEFEKAAAARDE 671

Query: 665 IHQLRQQ 671
           + +L+QQ
Sbjct: 672 LFRLKQQ 678