Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

 Score = 52.8 bits (125), Expect = 1e-10
 Identities = 78/333 (23%), Positives = 128/333 (38%), Gaps = 61/333 (18%)

Query: 18  PTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQ---RPTIILAPNKTLAAQLY 74
           P  I + L  L        L  + GS     LA + + A+   R   +L  +   A +L 
Sbjct: 55  PPEISRALAQLPRSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLL 114

Query: 75  GEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERK 134
            E+  F P+  V               +P  +T    + S +  +   RL+   A+   +
Sbjct: 115 EEIPWFAPDLKVRL-------------LPDWETLPYDNFSPHHDLVSERLATLYAVSRGE 161

Query: 135 -DAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQF 193
            + ++V + +A+Y L  P         L++G+ ++      +L    Y+        G++
Sbjct: 162 CEVLLVPATTAVYRLTPPSYLAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEY 221

Query: 194 RVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTP 253
            +RG ++D+FP  S     R+++FD+EIE +  FD      T R L          Y  P
Sbjct: 222 SIRGGLVDLFPMGS-ALPYRIDLFDEEIETLRTFD----ADTQRSL----------YPVP 266

Query: 254 RERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRY 313
             R+L A           R++ LD+       R  QR +   E+       SGI  Y   
Sbjct: 267 EIRLLPA-----------REFPLDDG---GRTRFRQRFR---EVFEGDPAKSGI--YKDV 307

Query: 314 LSGRAEG----------EPPPTLFDYLPHDGLL 336
            +G              E   TLFDYLP D +L
Sbjct: 308 SNGVPSAGIEYWLPLFFEETATLFDYLPKDAVL 340



 Score = 32.0 bits (71), Expect = 2e-04
 Identities = 37/188 (19%), Positives = 79/188 (42%), Gaps = 38/188 (20%)

Query: 427 RPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTE--YLHE--HGVKVRYLHSDID 482
           R +A  ++ L   + I  A  +R+ + T   + ++ +     L E   G +V +LH+++D
Sbjct: 816 RTLAMSLEGLRDFSVIATAPQKRLAIKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVD 875

Query: 483 TVERVE--------------------------IIRDLRLGVFDVLVGINLLREGLDMPEV 516
           T++ +                           ++RD      ++L+   ++  G+D P  
Sbjct: 876 TIDNMREKLQSLVPEARIVVGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHA 935

Query: 517 ALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRREKQ 576
             + I  A+K G  +    L Q  GR  R+ + +A  Y   +     KA+ +  ++R + 
Sbjct: 936 NTILINRAEKFGLAQ----LHQLRGRVGRS-HHQAYSY---LLVQDEKALTKQAKQRLEA 987

Query: 577 LAYNEQRG 584
           + + E+ G
Sbjct: 988 IQHMEELG 995