Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis JJ

 Score =  677 bits (1748), Expect = 0.0
 Identities = 354/673 (52%), Positives = 469/673 (69%), Gaps = 34/673 (5%)

Query: 2   SKAFELVSDYQPAGDQPTAIKQLLEGLEAG--LAHQTLLGVTGSGKTFTLANVIATAQRP 59
           S  F+L +D++P G QP AI  L++ LE     + QTLLGVTGSGKTFT+ANVI   Q+P
Sbjct: 3   SPDFKLKADFKPKGSQPEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKP 62

Query: 60  TIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHI 119
           T+++A NKTLAAQLY E K FFP N VEYFVSYYDYYQPE+Y+P  D +IEKDA +N  I
Sbjct: 63  TLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKI 122

Query: 120 EQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAEL 179
           EQMRL AT A+L R+D +IVASVS IYGLG+P+ + +M   L+ G+ I + D++ +L ++
Sbjct: 123 EQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDI 182

Query: 180 QYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDL 239
           QY RNDM    G+FRV+G+ +DI P   D + +RVEMF DEI+ I   D L  +    ++
Sbjct: 183 QYERNDMELVPGRFRVKGDTLDIIPGYQD-DILRVEMFGDEIDRIYELD-LKNMSKKHEI 240

Query: 240 ARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMN 299
             F +YP  H+V P E    AI+ I  EL    ++L+ N  +L+  R+ Q+T +DIEM+ 
Sbjct: 241 DSFYMYPAKHFVIPEEDKKNAIKSILKELD---EWLV-NLDMLKSHRLKQKTLYDIEMIE 296

Query: 300 ELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRK 359
           E G C GIENYSR+   R EGEP   L DY P D L++IDESH T+PQI  M+KGDRSRK
Sbjct: 297 ETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRK 356

Query: 360 ETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGL 419
           ++L+++GFRLPSA DNRPLKF+EF+      IFVSATP EYEL  S  +V EQ++RPTGL
Sbjct: 357 QSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSN-QVVEQIIRPTGL 415

Query: 420 LDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHS 479
           LDP +E+RP+  QV+D++ E        ER+L+TTLTKR+AE+LTEYL +  VK RYLHS
Sbjct: 416 LDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHS 475

Query: 480 DIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQT 539
           DIDT+ER EIIR+LRLG FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQT
Sbjct: 476 DIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQT 535

Query: 540 MGRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKD-IM 598
           +GRAARN N K +LYAD +T S++KA+ ETERRR+ Q  YNE+  I P+ + + +++ ++
Sbjct: 536 IGRAARNANSKVVLYADKMTDSIKKAVFETERRRKLQKEYNEKHNIMPKTIVKPIREKVV 595

Query: 599 ELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELA 658
           ++ D+         K +P+A                +   I +LE  MY+ A+ LEFE A
Sbjct: 596 DISDV---------KHIPVA---------------DIPNVIIELETEMYEAAEALEFEKA 631

Query: 659 AQKRDEIHQLRQQ 671
            + RD I +L+++
Sbjct: 632 IKIRDTIAKLKKK 644