Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., excinuclease ABC, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  981 bits (2535), Expect = 0.0
 Identities = 502/670 (74%), Positives = 570/670 (85%), Gaps = 3/670 (0%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F+L S + PAGDQPTAI +L++GLE+GLA QTLLGVTGSGKTFT+ANVIA   RPTII+A
Sbjct: 6   FQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTIIMA 65

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTLAAQLYGEMK FFPNNAVEYFVSYYDYYQPEAYVP ++TFIEKDASVNAHIEQMRL
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           SATKALLERKD V++ASVSAIYGLGDPDSYLKM+LHLR+GD + QRD+L+RL+ELQY+RN
Sbjct: 126 SATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYTRN 185

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           D+  +RG FRVRGEVIDIFPA+SD+ A+RVE+FDDEIE +S FDPLTG I  R +AR T+
Sbjct: 186 DIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKR-IARTTV 244

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YPKTHYVTPRE+ILEA E IK EL+ R+QYLLDNNKL+E QRI +R Q+DIEMM ELG+C
Sbjct: 245 YPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGYC 304

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
           SGIENYSRYLSGRA GE PPTL DYLP DGLL+IDESHVTVPQIGAM+KGDRSRK TLVE
Sbjct: 305 SGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKTTLVE 364

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           +GFRLPSALDNRPLKF+EFE L PQTI+VSATP+ YEL KSGGE+ EQVVRPTGLLDP +
Sbjct: 365 YGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTGLLDPEL 424

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
           EVRPV  QVDDLLSE   R A +ER+LVTTLTKRM+EDLTEYL EHGVKVRYLHSDIDTV
Sbjct: 425 EVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDTV 484

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LV ILDADKEGFLRSERSLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAA 544

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604
           RNVNGK ILYAD IT SM KAI ETERRREKQ  YN + GI P+ + + + D+M++ D  
Sbjct: 545 RNVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITDVMDVDDGR 604

Query: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664
           ++  +K      L +VAE  A        QL  +I KLE  M++HA+NLEFE AA  RDE
Sbjct: 605 EA--EKGHGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALRDE 662

Query: 665 IHQLRQQFIA 674
           + +LR+  I+
Sbjct: 663 VKRLRELLIS 672