Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 86.7 bits (213), Expect = 6e-21
 Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 35/308 (11%)

Query: 31  GLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFV 90
           G   QTL  + G G+  TLA++I   Q  T+I+  +   A  L  E+       A++  +
Sbjct: 15  GTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIKVRL 74

Query: 91  SYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGD 150
                       P  +T      S +  +   RL     +   + +V++  V+ +     
Sbjct: 75  -----------FPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLP 123

Query: 151 PDSYLKMMLH-LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQ 209
           P SYL   +  L++GD     D+ ++L +  Y   +  +E G+F +RG ++DIFP   + 
Sbjct: 124 PKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNM 183

Query: 210 EAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQ 269
             +R+E+FDDE+E I  FDP T   +S  +    + P   + T       AIE  +   +
Sbjct: 184 -PLRIELFDDEVETIRHFDPET-QRSSTPVNAVRLLPAKEFPTDS----SAIEGFRQRYR 237

Query: 270 VRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDY 329
            R + ++      E + + Q    ++         +GIENY              TLFDY
Sbjct: 238 RRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFFDEVS-----TLFDY 280

Query: 330 LPHDGLLI 337
           LP +  L+
Sbjct: 281 LPKNTQLV 288



 Score = 30.8 bits (68), Expect = 4e-04
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 457 KRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEV 516
           ++ A+D++  L E  V V +       +ERV  + D     F+VLV   ++  G+D+P  
Sbjct: 833 EKCAQDISTLLPEARVVVAHGQMRERDLERV--MSDFYHQRFNVLVCTTIIETGIDVPSA 890

Query: 517 ALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRRE 574
             + I  AD  G  +    L Q  GR  R+ +     YA  +T   ++   +  +R E
Sbjct: 891 NTIIIERADTFGLAQ----LHQLRGRVGRSHHQ---AYAYLMTPHPKRMTTDARKRLE 941