Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  759 bits (1961), Expect = 0.0
 Identities = 388/671 (57%), Positives = 495/671 (73%), Gaps = 3/671 (0%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F L ++++P GDQP AI Q++  L  G+  Q LLGVTGSGKTFT+ANVIA   RP +ILA
Sbjct: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTLAAQLY E +A FP+NAVEYFVSYYDYYQPEAYVP +DT+IEKD+S+N +I+++R 
Sbjct: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           +AT ALL R+D VIVASVS IYGLG P+ Y ++++ +  G   +   ++ RL E+QY RN
Sbjct: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           D  F RG FRVRG+V+++ PA   + A+R+E F D+I+ IS  DPLTG +    + +  I
Sbjct: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLG-SVGKTVI 244

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YP +HYV+ R+ ++ A+  I+ EL  R +     N+L+E QR+ QRT  D+EMM ELG+C
Sbjct: 245 YPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYC 304

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
           +GIENYSR+L GRA G+PP  L DY P D LL +DESH+TVPQ+GAM+KGDRSRK TLV+
Sbjct: 305 NGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVD 364

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           FGFRLPSALDNRPL+F EF     QT++VSATP ++EL +S G +AEQ++RPTGL+DP++
Sbjct: 365 FGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVV 424

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
           EVRP   QVDDLL+E R RAA DER+L+TTLTKRMAEDLTE+L   G+ VRYLHSDIDT+
Sbjct: 425 EVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTM 484

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ER+ II+ LR G  DVLVGINLLREGLD+PEV+LV+ILDADKEGFLRS  SLIQT GRAA
Sbjct: 485 ERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAA 544

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604
           RN  G+ ILYAD++T SMR A+DET RRRE+Q A+NE  GI P+ +++S+    +    A
Sbjct: 545 RNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSA 604

Query: 605 KSR--KQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKR 662
            S   K K       A  A E+ A    +P+ + K I KLE  M + A+ LEFE AA  R
Sbjct: 605 ASEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAATLR 664

Query: 663 DEIHQLRQQFI 673
           D I  LR++ I
Sbjct: 665 DRIRLLRERLI 675